Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1890 ATGCCATGTTATGCCTATACCTTGTTTTCCTTTACGATGATGGTTGGGAAGGATGTCAGTGAAGAGTCACAGAAGCTGACACTCAAGGGCGAAGGAAACATAAGTTTTGGAGAGATGAAGAGGACTAGGGATGATATTTATGCTGGCTCTACTTCTCAATTTAAGCGACCCTTGGGTTCCTCACGTGGGGATTCCTATGGTCAATCCCAAGTTGCTGGAGGAGGTGGCAGTGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGTACATCACAGAAATTGACTACAGATGATGCCTTATCCTACTTGAAGGAAGTGAAAGACATGTTTCACGACCAAAGAGAAAAATATGACATGTTCCTTGAGGTTATGAAGGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTGATAGCAAGGGTGAAGGAACTATTCAAAGGGCACAACAATTTGATTTTTGGATTCAACACCTTCTTGCCAAAGGGATATGAGATAACACTTGATGACGATGATGCTCCTCCAAAGAAGACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTTCAAAACGATGAGCACGTTTACAAATCATTTTTGGACATTTTGAATATGTACCGCAAAGAGCACAAGGATATTGGCGAAGTCTATAATGAGGTTGCTGCCCTTTTTGAGGACCATCCAGATTTGCTTGATGAGTTTACTAGATTCTTACCGGATACTTCTGCAACACCTTCTACACAGCATGCTCCATATGGTCGAAATTCATTCCAGCGTTTCAATGAGCGGAGTTCTCCAGCACCCATGATGCGGCAAATGCAAGTGGACAAGCAACGCTATCGGCGGGATAGGCTTACTACTTCTCATGATCACGACAGTGTTGATTGTCCTGAGCTGGATGATGATAAGGCGATAGTGAAAGTGCATAAGGAGCAGAGGAAACGTGTTGAGAAGGATAGAGATAGAAGAATACGCGATCAAGATGAGAGAGAACCTGATCATGATGACAACAAGGATATAAGCTCACAACGTGTTTCTGACAAAAAAAAATCTGTCAAGAAGGCTGAAAATTTTGGGTTGACTACTGACTTTGCTACTTATGATGACAAAGATACCTTAAAGAGCATGTATAGCCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAGGTTGACCAGTTTTGATGACTACCAGGCTTTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGACTTACAAAATTTGGTAACCGATTTACTTGGAAAGCACCCTGATCTTATGGAAGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCCCTGTGTAGTGATGGTCAATTATCCAGATCATTGAAGATGGAGGACAAAGATAAAGATCTGAAGCGTGAGATTGATGGAGCTAAAGACAAGGAAAGATACCGAGAGAAGTACTTGGCAAAATCCATCCAAGAACTCGACCTCAGTAACTGTCAACTTTGTACTCCCAGCTACCGGCTTCTGCCTGAAGATTATCCAATTCCTACGGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTATTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTCAAATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGCTCAGCCGCCAGATGTGCAGAGGAGTTGTATAGTAACATTAATGAAAATAAGATCAATATGGAGGTTCCAATCCGTTTTGAAGAACACTTTAGTGCTCTTAATTTAAGGTGCATTGAGCGTCTATATGGAGACCATGGTCTTGATGTTATGGAGATATTACGTAAAAATCCAATTCATGCTCTTCCTGTGATATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGCCGTTCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACCACAAATCACTTGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCGAAGAACTTGAGCACAAAATCTTTGGTGACTGAAATCAAAGAAAATAAAGTAAAACAGCAGAAAGAGTATGATATTCTTCAGGCCATTGCTGCTGGAAATAAACAGCCTCTGATTCCACATCTAGAATTTGAATATTTTGATACTGGGATTCATGAAGACCTGTATAAACTTATTCATTATTCATGTGAAGAGGTCTTCCCAAGTAAGGAGCTATCAAATAAGATAATGAGACTTTGGACTACCTTGGAGCTTATGCTTGGCGTTCCCTCTCGTTCTCATGGGACAGAAAATGTGGAGGACAGGAATACTGGGCACTCTTTCACCAAATTTGTTGCGTCAAATATAGGAGGAGGTGATGGAGACTCTATTTTAATGAATTCTAGGTTACCAAAATCTGATAATAATGAAGCTGATAGTAGAATAGCTGAGGTAAAGAAAGTTCACCAGACTAGTTCAGCAGCGAATGATAAAGAAAATGGATATGTTGACTGTGATCATGTTTGTGGAGATGATTCTATAATGGATAAAGGGCTGAAAAATGTAGATAGTAGTGATAAAGTCTCTGGGTTTAGTAAACAAATTGCCTCTGATGAACAAGGTGCTATCAACAATGCATCAATTGCAGTTAGAGGAGAAAATAACTTGAGCAAAACCAGCTTAGAAATTACTTCAGGCTGTGTCCTCAATCCAGCAAGACCTACTGCTACACTAGGTGATGACAATTCTGTAGCCAAGTCTCAGAGTGGTAAAGTACCTTTGATGGAGGGACATGACATTGCACCTCCACTTCCATTGGCCAATGGAGTTCTAATTGAAAGCAATAAAGTTAAAAACCATGAAGAATCTGCTGAGCCTTGCAAAGTTGAAAAAGAGGAGGGTGAATTATCGCCCAATGTTGATTTTGAGGAGGATAACTTTGTTGGCTATGAAAGCTCGAATGTGCAGGCAATGCCCAAGTCAAAACACAATATTGAAAGAAGAAATTGTCAATCCCAAAATGGGGAGGAAGAATGTTGTCCAGAGGCTAGAGGTGATATTGTTGCAGTTGCTGATGAAGAGGTCAGTGAAAATGCATCTGAAGCTGGTCAAGGTGTCTCATCAGGTAGTGAGTCTGCTGGTGATGAATGCTCTAGGGAAGAGCATGAGGAGGAGGAAGATATAGATCGTGATGATGTTGATGGCAAGGCTGAGAGTGAAGGTGAAGCTGATGGAGTGTGTGATGCCCAATCTGCTGGAGGAGAGGGCTCATCATTGCCATTATCAGAAAGGTGCCTTTTATCTATGAAGCCTCTCACAAAGCGTGTTTCAGCAGATTTGCTTGATGAGGAAAGAAAGAATTTCAGGGTCTTTTATGGAAATGATGATTTTTTTGTGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAGAAGTATTCGTTGAGTGCTGAAATGAAATGGAAAACTGCAAAGGAGCCTTGTTCTCCGGATCCTTATTCGAGATTCATAAATGCACTGTACAACTTGCTTGATGGATCCGCCGACAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGAAACCAGTCATATGTATTATTCACATTGGACAAGTTAATATATAAATTGGTCAGACAGCTTCAAACTGTTGCCACTGATGATATAGACAATAAGCTTCTCCAATTGTATGAGTATGAAAAATCTCGGAGACCAGGGAGGTTTGTTGATTCAGTATATCATGCAAATGCACGTGTCATCCTTCATGATGAGAATATATATCGTTTGGAATGTTCCTCTACCCCAACCCGACTGTCCATCCAGCTGATGGACAATATGAATGAGAAGCCTGAGGTGTTTGCTGTTTCTATCGATCCAAATTTTTCCTTTTATCTGTACAATGATTTTCTGTCAGCCTTTCCTGGCAAAAAGGAACCCCATGGCATTTTAATGCAAAGAAACAAGCGCAAATATGGAGAGTTAGATGAGCTTGCTGCAACATGCTTGGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAGTGTAAGATAGCTTGCAACTCATCCAAGCCGTCTCTTCTGCAGATCTCCTATGTTCTGGACACAGAAGATTTTTTCTTCCGTCCAAAAAGGCAAAGAAAAACATCATTGGGGAGCGCATCTTCCCAGTATCGGGTTAGAGAGGAACGATTTCGCAGATTATTACCAGTCTCTTAA 4299 0.4066 MPCYAYTLFSFTMMVGKDVSEESQKLTLKGEGNISFGEMKRTRDDIYAGSTSQFKRPLGSSRGDSYGQSQVAGGGGSGGGGGGGGGGGTSQKLTTDDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDDDDAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYNEVAALFEDHPDLLDEFTRFLPDTSATPSTQHAPYGRNSFQRFNERSSPAPMMRQMQVDKQRYRRDRLTTSHDHDSVDCPELDDDKAIVKVHKEQRKRVEKDRDRRIRDQDEREPDHDDNKDISSQRVSDKKKSVKKAENFGLTTDFATYDDKDTLKSMYSQAFSFCEKVKERLTSFDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHPDLMEEFNDFLERCENIDGFLAGVMSKKSLCSDGQLSRSLKMEDKDKDLKREIDGAKDKERYREKYLAKSIQELDLSNCQLCTPSYRLLPEDYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFKCEDDRFELDMLLESVSSAARCAEELYSNINENKINMEVPIRFEEHFSALNLRCIERLYGDHGLDVMEILRKNPIHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHHKSLDHRSFYFKQQDSKNLSTKSLVTEIKENKVKQQKEYDILQAIAAGNKQPLIPHLEFEYFDTGIHEDLYKLIHYSCEEVFPSKELSNKIMRLWTTLELMLGVPSRSHGTENVEDRNTGHSFTKFVASNIGGGDGDSILMNSRLPKSDNNEADSRIAEVKKVHQTSSAANDKENGYVDCDHVCGDDSIMDKGLKNVDSSDKVSGFSKQIASDEQGAINNASIAVRGENNLSKTSLEITSGCVLNPARPTATLGDDNSVAKSQSGKVPLMEGHDIAPPLPLANGVLIESNKVKNHEESAEPCKVEKEEGELSPNVDFEEDNFVGYESSNVQAMPKSKHNIERRNCQSQNGEEECCPEARGDIVAVADEEVSENASEAGQGVSSGSESAGDECSREEHEEEEDIDRDDVDGKAESEGEADGVCDAQSAGGEGSSLPLSERCLLSMKPLTKRVSADLLDEERKNFRVFYGNDDFFVLFRLHQILYERILSAKKYSLSAEMKWKTAKEPCSPDPYSRFINALYNLLDGSADNAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDDIDNKLLQLYEYEKSRRPGRFVDSVYHANARVILHDENIYRLECSSTPTRLSIQLMDNMNEKPEVFAVSIDPNFSFYLYNDFLSAFPGKKEPHGILMQRNKRKYGELDELAATCLAMEGVKVINGLECKIACNSSKPSLLQISYVLDTEDFFFRPKRQRKTSLGSASSQYRVREERFRRLLPVS 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1890 1432 FunFam Paired amphipathic helix protein SIN3 374 448 - -
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 51 90 - -
Glsi11g1890 1432 Gene3D Paired amphipathic helix 97 159 IPR036600 GO:0006355
Glsi11g1890 1432 SMART hdac_interact2seq4b 510 610 IPR013194 -
Glsi11g1890 1432 Pfam Paired amphipathic helix repeat 114 158 IPR003822 GO:0006355
Glsi11g1890 1432 Pfam Paired amphipathic helix repeat 198 242 IPR003822 GO:0006355
Glsi11g1890 1432 Pfam Paired amphipathic helix repeat 399 443 IPR003822 GO:0006355
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 1013 1035 - -
Glsi11g1890 1432 Gene3D Paired amphipathic helix 174 246 IPR036600 GO:0006355
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 1017 1035 - -
Glsi11g1890 1432 FunFam Paired amphipathic helix SIN3-like protein 174 245 - -
Glsi11g1890 1432 Pfam C-terminal domain of Sin3a protein 1147 1400 IPR031693 -
Glsi11g1890 1432 FunFam Paired amphipathic helix protein Sin3 97 159 - -
Glsi11g1890 1432 SUPERFAMILY PAH2 domain 172 244 IPR036600 GO:0006355
Glsi11g1890 1432 ProSiteProfiles PAH domain profile. 91 161 IPR003822 GO:0006355
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 314 356 - -
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 1074 1089 - -
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 1050 1114 - -
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 279 302 - -
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 51 72 - -
Glsi11g1890 1432 Pfam Sin3 family co-repressor 514 604 IPR013194 -
Glsi11g1890 1432 SUPERFAMILY PAH2 domain 88 160 IPR036600 GO:0006355
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 245 272 - -
Glsi11g1890 1432 ProSiteProfiles PAH domain profile. 175 245 IPR003822 GO:0006355
Glsi11g1890 1432 Gene3D Paired amphipathic helix 375 448 IPR036600 GO:0006355
Glsi11g1890 1432 ProSiteProfiles PAH domain profile. 377 446 IPR003822 GO:0006355
Glsi11g1890 1432 SUPERFAMILY PAH2 domain 380 446 IPR036600 GO:0006355
Glsi11g1890 1432 PANTHER SIN3B-RELATED 91 1290 IPR039774 GO:0003714
Glsi11g1890 1432 MobiDBLite consensus disorder prediction 245 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1890 Glsi-ChrGlsi11 11826173 11841877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1890 86 194 WRKY Transcription Factor Family AT4G12020 51.818 3.74e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi11g1890 Sin3a_C 1.6e-51 No_clan