Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1881 ATGGCGGGAGAGAGCAGCTTGGATGGGGATCTTACGACTTCCGACACGACAGGATCAGCAAGTCATCCACCAACTGTAGGCCCTGAAAATACACAAGCAAACACAGACAGGCAGCAAGATTCAAACAAGAGCAAGATCAAAGATGAAAGCAACAAAACAGTACCCTTCTACAAGCTTTTCTCATTTGCAGATTCTTTGGATCGTCTATTAATGTTTGTTGGGGCAATAGCTGCTGTTGCTAATGGAATGTCTGTCCCTCTAATGACTATAACTTTTGGTGATGTCATTGATGCTTTGGGGGGAAACGTTAACACCAAACATGTTGTGCATGATGTTTCCAAGGCGTCTCTGGACTTTGTATACTTAGCCGTGGGTACCTTTTTTGCTTCATTTTTGCAGGTGACTTGTTGGATGGTCACCGGGGAGAGACAGGCTGCAAGAATAAGAAGCTTATACCTGGAAGCAATTTTGAGGCAAGATATCAGCTTTTTTGATAAGGAAACTAACAGTGGGGAGGTTGTTGCAAGGATGTCAGGTGACACGGTTCTTATTCAAGAAGCCATGGGCGAGAAGGTGGGAAAGTTCATACAGCATGTGGCAACATTTATGGGAGGTTTTGTCATAGCATTTTTCAAGGGTTGGCTTCTAACCCTTGTCCTGCTATCTTCTATTCCACCTCTTGTCTTCTCTGGTGCTTTATTGAGCTTTCTTATAGCAAAGTTGGCATCCCGTGGACAAGCAGCTTATTCAACAGCAGCAAACGTGGTAGAGCAGACAATCGGTTCTATTCGAACTGTTGCATCATTTACAGGGGAGAAGCAAGCTATAGATAAATACAACCAATCCTTAATAAAAGCTTACCGCTCTGGTGTGCAAGAGGGAGTAGCTGCTGGTTTGGGTTTCGGTTCAGTTCGTTTATTTGTTTACTTCAGTTATGCTTTGGCCGTATGGTATGGAGGGAAGATGGTACTAGAGAAAGGATATACAGGAGGACAAGTCATGAGTGTATATTTTGCATTACAGACTGGCTCCTTGTCTCTTGGGCAGGCATCTCCAAGCTTGACTGCATTTGCTGCAGGACAAGCTGCAGCCTTTAAAATATTTGAAACAATTATGAGGAAGCCAGAAATTGATGCTTATGACACTAGTGGCAGGCAGCTAGATGATATTGGTGGAGATATAGAACTGAAGGAGGTTTGCTTTACTTATCCTGCAAGACCAGATGAATGGATTTTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTGATTGAGAGATTTTATGATCCACAAACTGGTGAAGTTCTCATTGACGGTATCAATCTCAGAGAGTTTCAATTGAAATGGATTAGACAGAAAATAGGCCTTGTCAGCCAAGAACCAGTTCTGTTTACTTGTAGCATCAAAGAGAATATCGCCTATGGTAAGGATGGTGCAACGGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTACTAAATTCATTGACAAACTTCCTCAGGGACTAGACACAATGGTAGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAAAGAGTTGCTATTGCCAGGGCAATTTTGAAAGACCCAAGAATTCTACTTCTTGATGAAGCTACAAGTGCTCTTGATGCCGAATCAGAGAGAATAGTACAGGAGGCACTGGACAGAATTATGATAAGCCGAACTACTGTCATTGTAGCCCACCGCTTAAGTACCATAAGGAACGCTGATATTATTGCCGTTATTCATCAGGGAAAGATAGTAGAAAAAGGTTCACATGCTCAGCTCACTAAGGATCCTGATGGAGCCTATAGCCAGCTCATTAAATTGCAAGAAATTAGAAGAGAATCAGAACAGGATGGTGCAAATGACAAGGATAGGCCAGAAAACTTTGCGGATTCTGGAAAACCATCAAGTCAACGATTTTCTTTCCTTCGATCAATAAGCCAAGGATCATCTGGAAAAGGAAATAGCAGTCGTCACTCTTTCATAATGTCATATGGCATGCCTACTGGGCTCTTGGAAACAGCAGGTGGAGACTCTGAAGCTCCTCCTTCTGCAGCATCACATAAACCTCCAGAAGTCTCACTTCTCCGCCTTGCTCATCTTAACAAGCCCGAATTCCCAGTGTTACTCATGGGCACTATGGCTGCAGCAGTAAATGGAGCAATATTACCCATTATGGGGCTCCTGCTATCCGGTATGATAAACACTTTCTATGAGCCTCCAGATGAACTCCGCAAAGATTCAAAATTTTGGGCATCGATATTTGTTGCACTTGGTGTGGCAGCCTTCTTAACTTACCCAGTAAGGTCCTACTTTTTTTCTGTAGCTGGTTGTAAGTTGATAAAAAGAATCCGGCTAATGTGTTTTGAGAAAGTTATTCATATGGAAGTAAGTTGGTTTGACAAAGCTGAGCGTTCAAGTGGAGCACTTGGAGCAAGGCTCTCTACTGATGCTGCTTCTATTCGAGCTTTGGTTGGGGATGCACTAGGTTTGCTGATTCAAGATATTGCTACTGTAATCACTGCCTTGGTAATCAGCTTTGAGGCAAACTGGCAGCTTTCTTTGATCATTCTCGTTTTGCTGCCTTTACTGGTTGTAAATGGTCTGGCACAAATAAAGTCCATGCAAGGATTCAGCACAGATGCAAAGAAACAATATGAGGAAGCAAGTCAAGTTGCTAATGATGCTGTAGGGAGTATTAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCGGAAGAAATGTGAAGGACCAATAAAGACAGGTATAAGGCAAGGGTTAATCAGCGGAACTGGTTTTGGGTTATCATTCCTCTTCCTGTTTTCTGTCTATGCATGCAGTTTTTATGCTGGAGCCCGACTTGTTCAGGGTGGCAAAACATCAATCTCGGATGTTTTCCGTGTCTTCTTTGTTCTCACTATGGCAGCTATAGCAGTCTCTCAATCTGGCTTTGTGGCCCCTGGTGCCAGTAAAGCTAAAAGCTCTGCTGCTTCCATATTTGCTATTCTTGATCAGAAATCAAAAATAGACCCCAGTGATGACTCCGGAATGACATTGCAAGATGTGAAGGGAGACGTTGAGTTTCGCCATGTGACTTTCAAGTATCCCACCAGGCCTGATGTTCAAATATTCAGAGATCTTTGCTTGGCCATCCATGCAGGCAAGACAGTTGCACTTGTGGGAGAAAGTGGAAGTGGAAAGTCCACAGTGATCTCATTGCTTCAAAGATTTTATGACCCAGACTCAGGTCACATAACACTGGATGGAATAGAAATCCAAAAGCTTCAAATTAAATGGTTAAGGCAACAAATGGGCTTGGTAAGCCAGGAGCCTGTGTTGTTTAATGACACCATCCGAGCCAATATTGCATATGGCAAGGAAGGAGATGCAACAGAAGCAGAAATTGTTGCTGCCGCAGAATTAGCAAATGCCCACAAGTTCATTAGTAGCTTGCATCAGGGATATGACACAGTGGTGGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGGGTGGCGATTGCACGAGCCATAGTGAAGAATCCTAGAATATTACTACTAGATGAAGCCACCAGTGCCCTTGATGCTGAATCTGAAAAAGTGGTTCAAGATGCACTGGATCGTGTCATGGTGGACAGAACCACCGTTGTTGTGGCCCATAGATTATCCACTGTCAAGGGTGCAGATTTAATCGCAGTGGTTAAAAATGGAGTCATTGCAGAGAAAGGAAAGCATGAAACTTTGCTCAACAAGGGTGAAGCCTATGCTTCCTTGTTAGCACTACACACAAGTGCTTCTTAA 3891 0.4348 MAGESSLDGDLTTSDTTGSASHPPTVGPENTQANTDRQQDSNKSKIKDESNKTVPFYKLFSFADSLDRLLMFVGAIAAVANGMSVPLMTITFGDVIDALGGNVNTKHVVHDVSKASLDFVYLAVGTFFASFLQVTCWMVTGERQAARIRSLYLEAILRQDISFFDKETNSGEVVARMSGDTVLIQEAMGEKVGKFIQHVATFMGGFVIAFFKGWLLTLVLLSSIPPLVFSGALLSFLIAKLASRGQAAYSTAANVVEQTIGSIRTVASFTGEKQAIDKYNQSLIKAYRSGVQEGVAAGLGFGSVRLFVYFSYALAVWYGGKMVLEKGYTGGQVMSVYFALQTGSLSLGQASPSLTAFAAGQAAAFKIFETIMRKPEIDAYDTSGRQLDDIGGDIELKEVCFTYPARPDEWIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQTGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANATKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMISRTTVIVAHRLSTIRNADIIAVIHQGKIVEKGSHAQLTKDPDGAYSQLIKLQEIRRESEQDGANDKDRPENFADSGKPSSQRFSFLRSISQGSSGKGNSSRHSFIMSYGMPTGLLETAGGDSEAPPSAASHKPPEVSLLRLAHLNKPEFPVLLMGTMAAAVNGAILPIMGLLLSGMINTFYEPPDELRKDSKFWASIFVALGVAAFLTYPVRSYFFSVAGCKLIKRIRLMCFEKVIHMEVSWFDKAERSSGALGARLSTDAASIRALVGDALGLLIQDIATVITALVISFEANWQLSLIILVLLPLLVVNGLAQIKSMQGFSTDAKKQYEEASQVANDAVGSIRTVAAFCAEEKVMELYRKKCEGPIKTGIRQGLISGTGFGLSFLFLFSVYACSFYAGARLVQGGKTSISDVFRVFFVLTMAAIAVSQSGFVAPGASKAKSSAASIFAILDQKSKIDPSDDSGMTLQDVKGDVEFRHVTFKYPTRPDVQIFRDLCLAIHAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIEIQKLQIKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGDATEAEIVAAAELANAHKFISSLHQGYDTVVGERGVQLSGGQKQRVAIARAIVKNPRILLLDEATSALDAESEKVVQDALDRVMVDRTTVVVAHRLSTVKGADLIAVVKNGVIAEKGKHETLLNKGEAYASLLALHTSAS 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1881 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1043 1290 IPR027417 -
Glsi11g1881 1296 CDD ABC_6TM_Pgp_ABCB1_D2_like 724 1037 - -
Glsi11g1881 1296 MobiDBLite consensus disorder prediction 635 653 - -
Glsi11g1881 1296 MobiDBLite consensus disorder prediction 7 39 - -
Glsi11g1881 1296 FunFam ABC transporter B family member 9 58 390 - -
Glsi11g1881 1296 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 733 1019 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g1881 1296 Gene3D - 392 645 IPR027417 -
Glsi11g1881 1296 PANTHER ABC TRANSPORTER B FAMILY 32 635 IPR039421 -
Glsi11g1881 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1054 1291 IPR003439 GO:0005524
Glsi11g1881 1296 SUPERFAMILY ABC transporter transmembrane region 720 1039 IPR036640 GO:0005524|GO:0016020
Glsi11g1881 1296 Gene3D ABC transporter type 1, transmembrane domain 118 1009 IPR036640 GO:0005524|GO:0016020
Glsi11g1881 1296 SUPERFAMILY ABC transporter transmembrane region 58 376 IPR036640 GO:0005524|GO:0016020
Glsi11g1881 1296 MobiDBLite consensus disorder prediction 1 47 - -
Glsi11g1881 1296 FunFam ABC transporter B family member 1 384 633 - -
Glsi11g1881 1296 ProSitePatterns ABC transporters family signature. 533 547 IPR017871 GO:0005524|GO:0016887
Glsi11g1881 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 632 IPR027417 -
Glsi11g1881 1296 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 72 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g1881 1296 MobiDBLite consensus disorder prediction 635 661 - -
Glsi11g1881 1296 Pfam ABC transporter transmembrane region 71 344 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g1881 1296 Pfam ABC transporter transmembrane region 732 1003 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g1881 1296 CDD ABC_MTABC3_MDL1_MDL2 394 632 - -
Glsi11g1881 1296 SMART AAA_5 421 593 IPR003593 GO:0016887
Glsi11g1881 1296 SMART AAA_5 1081 1274 IPR003593 GO:0016887
Glsi11g1881 1296 FunFam ABC transporter B family member 1 712 1017 - -
Glsi11g1881 1296 Gene3D - 1044 1295 IPR027417 -
Glsi11g1881 1296 CDD ABC_6TM_Pgp_ABCB1_D1_like 71 355 - -
Glsi11g1881 1296 ProSitePatterns ABC transporters family signature. 1194 1208 IPR017871 GO:0005524|GO:0016887
Glsi11g1881 1296 Pfam ABC transporter 1074 1222 IPR003439 GO:0005524
Glsi11g1881 1296 FunFam ABC transporter B family member 1 1044 1293 - -
Glsi11g1881 1296 FunFam Uncharacterized protein 1018 1044 - -
Glsi11g1881 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 394 630 IPR003439 GO:0005524
Glsi11g1881 1296 CDD ABC_MTABC3_MDL1_MDL2 1054 1288 - -
Glsi11g1881 1296 Pfam ABC transporter 413 561 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1881 Glsi-ChrGlsi11 11780058 11785349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1881 695 1295 Calmodulin-binding Proteins AT2G36910 38.925 1.10e-131 435