Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1862 ATGAAACAAGTTTCTATGTGGGTGGTGTTCATTTCATTCCTTTTCCTCCTGAACAAGAGTGATTGTGTGGAGGAAGAGGTCAGCATTACACTGATAAACTTTCTTGCAAAACTCACTAACAACAATGGCCTACAGAACTCTACTTTGGTGTGGAAGCCAGACTCTGATCCCTGCAAGGACCTCTGGCAAGGTGTAATATGCGATGTTAGTAATGTATCCGTACAGAAGTTGTTTCTTGACAGGTCCAATTTAGGTGGAACTCTTGATGCTGCTATGCTTTGCAACTCCCAGCCCCTCGCTGCGTCTCTTACCATTCTTAGTCTTGATGGCAACAACGTAAGAGGAGGAATAGCAGCTGAGGTTGGATACTGCAAACATCTCACTCGCTTGCATCTGAGTGGGAATCAACTTTCTGGAAACCTTCCTGATTCAATAGCCATGTTGAGTAACTTGAAAATACTTGACATTTCAAACAACAACTTCTCCGGTAACTTGCCAAACTTGTCCAGAATCTCAGGGTTGAACACGTTCCTTGCCCAAAACAATGAGCTCACTGGGGAGATACCCACATTTGATTTCTCCAATTTTGACCACTTCAATGTCTCCTTCAACAATTTCAGTGGCCGCATTCCCGAAGTGCATGGCCATTTCTTTGCGGACAGCTTCTTTGGTAATCCCGAACTCTGTGGAAATCCATTACCAAAAAACTGTTCAGCTCTCCCTACTGATGTGAATTCAGATTCAGAAAAATCGAAGGGTACTTCAAAAGGCCAGATTCTTATGTATTCAGGCTATGCTGTATTGGGTTTGATCTGTATCCTTTTAGTAGTTTTCAAGCTGTGTAAAAGAAAGAAGACAGGAAAGAAGGATCAAGCAATAAAAGAGGGAGCAGCAACTGATGACAGTACTGACAAGCCTAGCTATGTTTCAGGTGAATACAAACTCGGTATAAGCAGATCTGAGTTTTCAGTCACTTCTGAAAGTGGGATGGTTTCACAATCACTTATAGTTCTTTCAAGCCCGGTGGTAAATGATATTAAATTTGAGGACTTGATGAGGGCCCCTGCTGAGCTGATAGGCAGAGGAAAGTACGGTAGTCTTTTTAAGGTGACGCTTGGCCACGGGACGATGGTGGTTGTTAAAAGGATTAAGGACTGGACTATACCCAGCCATGACTTCAATCAAAGAATGCACATGCTGGCCCAAGTGAAGCACCCTTATGTACTGCCACCTCTTGCTTTCTATTGTTGCAAACAAGAGAAGCTTTTGATCTACGAATATCAGCGGAATGGAAGCTTATTCAAGTTTCTACACGATTCCTCAAAATCCTTTGAGTGGACTATCAGACTTGAAATTGCAGCTACGGTTGCCGCGGCATTAGCTTTCATGCATCAAGAGCTTCGTGAACATGGGATTGCACATGGTAACTTGAAATCCTCCAACATTTTGCTAAACAAGAACATGGAGCCCTGCATAAGCGAGTATGGTGCTATGGTTATGGATGATCAACACAGTTCATCTTTTGTAGCCGGTGCATCAGATGCCTTCAAGGGAGATGTTTATGGCTTTGGAGTGATTCTTCTCGAACTACTTACCGGGAAGTTAGTGAAGAGCAATGGGATTGACTTGACTGAGTGGGTTCAGTCAGTTCTAAGGGAAGAATGGTCAGGAGAAGTCTTTGACAGGTCCCTATTATCAGAGTATGCAAGTGAAGAGAGGATGGTTAACTTGCTCCAACTGGCTCTAAAATGTGTTAATCCTTCTCCACAGGCTAGGCCAAGTATGAGCCAAGTTGCTCTCATGATTAACACAATCAAAGAGGAAGAAGAAAAATCCTTGATTTATGAAGGTTTTGATCCTGAGTCCTGGAAGCCTGGAAAAAGGAGGGCATTATCAGATCAAATTTTCAAGAACAGAAACATACACACAAATGGTGGACTACCCAGAAATGAGTTAGGGTCTGCCTTTACGATCTGTGGGATGTCGGAAAGCATGTATCCTAAGTGGTTTTCTGACCATACCCATTTGAAGATGGCTTGGTTTCAGCATCAAATCCAGCAAAAAGATGGTTACTTGAGCTACCCACCACCGGTTTTGCCTTCATATTCATCTCCATACCCTGGTTCATTCCACAAAGAACCGGTATCTTCGTCCCAATCACCTTCGTCTGCCGGTACTAGAATTAGTCCGGCTGTTCTTTTCATTATAGTGATTCTAGCCGTACTATTTTTCATATCTGGTCTGCTTCACCTGCTTGTTAGATTTCTCATAAAGCATCCATCATCCTCACCATCTACTCATTCTAATAGACACCAGGAAATCTCTAGCTCCGATGCTCTCCAAAGACAGCTGCAACAACTTTTCCATCTCCATGACTCGGGTCTAGATCAAGCTTTCATTGATGCCCTTCCTGTTTTCCAGTATAAAGAGATAGTGGGTCTGAAAGAACCATTTGACTGTGCTGTTTGTCTCTGTGAATTTTCTCAACACGATAGGCTCAGGTTGCTTCCTATGTGCAGCCATGCTTTTCATATCAATTGTATAGACACCTGGCTCCTATCAAACTCGACTTGCCCGCTCTGTAGAGGAACCCTCTTTACTCCAGGATCTTCAATTGAAAACCCAATATTTGATTTTGATGATCTAAGGGAACAAGATGGGTGCCCGTGTGATGGAGAAAATGGATTCACTACGAGACAAAAAACAATTGAAATTGAAGAAACCGTAGAGAAAGGGGCTCTCCCTGTAAGACTTGGTAAATTCAGAAAGCTCAATGTGGAGGTTGGGGAGAATGGAGGAGAGACTAGTAGTAGTAATTTGGATGCAAGAAGATGTTTCTCAATGGGATCTTACCAGTATGTGCTTGCCAACTCAGACCTCCGAATTACCTTGAACCATGACTCAAATATCGCGAAAGGAACAACAGAACAAACCGATAAGCTTTCAATAGAAGGGGATACGGAAGCAAAAAGGATTAGAAGTGTGAGTAAGGGTGAGAGCTATTCTGTTTCCAAGATCTGGCTTTGGTCGAAGAAGGGCAAATTTTCTAGTTCTTCGGACGCTCAAATGGGCATGCCATCTTCTCTTCATACAGACTTGCCTTGGATGAGAAACACAGAAGAGACCTGA 3129 0.4298 MKQVSMWVVFISFLFLLNKSDCVEEEVSITLINFLAKLTNNNGLQNSTLVWKPDSDPCKDLWQGVICDVSNVSVQKLFLDRSNLGGTLDAAMLCNSQPLAASLTILSLDGNNVRGGIAAEVGYCKHLTRLHLSGNQLSGNLPDSIAMLSNLKILDISNNNFSGNLPNLSRISGLNTFLAQNNELTGEIPTFDFSNFDHFNVSFNNFSGRIPEVHGHFFADSFFGNPELCGNPLPKNCSALPTDVNSDSEKSKGTSKGQILMYSGYAVLGLICILLVVFKLCKRKKTGKKDQAIKEGAATDDSTDKPSYVSGEYKLGISRSEFSVTSESGMVSQSLIVLSSPVVNDIKFEDLMRAPAELIGRGKYGSLFKVTLGHGTMVVVKRIKDWTIPSHDFNQRMHMLAQVKHPYVLPPLAFYCCKQEKLLIYEYQRNGSLFKFLHDSSKSFEWTIRLEIAATVAAALAFMHQELREHGIAHGNLKSSNILLNKNMEPCISEYGAMVMDDQHSSSFVAGASDAFKGDVYGFGVILLELLTGKLVKSNGIDLTEWVQSVLREEWSGEVFDRSLLSEYASEERMVNLLQLALKCVNPSPQARPSMSQVALMINTIKEEEEKSLIYEGFDPESWKPGKRRALSDQIFKNRNIHTNGGLPRNELGSAFTICGMSESMYPKWFSDHTHLKMAWFQHQIQQKDGYLSYPPPVLPSYSSPYPGSFHKEPVSSSQSPSSAGTRISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSPSTHSNRHQEISSSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSQHDRLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLFTPGSSIENPIFDFDDLREQDGCPCDGENGFTTRQKTIEIEETVEKGALPVRLGKFRKLNVEVGENGGETSSSNLDARRCFSMGSYQYVLANSDLRITLNHDSNIAKGTTEQTDKLSIEGDTEAKRIRSVSKGESYSVSKIWLWSKKGKFSSSSDAQMGMPSSLHTDLPWMRNTEET 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1862 1042 FunFam RING-H2 finger protein ATL46 782 867 - -
Glsi11g1862 1042 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Glsi11g1862 1042 SUPERFAMILY L domain-like 54 216 - -
Glsi11g1862 1042 ProSiteProfiles Zinc finger RING-type profile. 820 862 IPR001841 -
Glsi11g1862 1042 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 93 188 - -
Glsi11g1862 1042 Gene3D Phosphorylase Kinase; domain 1 323 427 - -
Glsi11g1862 1042 MobiDBLite consensus disorder prediction 1016 1042 - -
Glsi11g1862 1042 Gene3D Ribonuclease Inhibitor 22 237 IPR032675 -
Glsi11g1862 1042 ProSiteProfiles Protein kinase domain profile. 353 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1862 1042 SMART ring_2 820 861 IPR001841 -
Glsi11g1862 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 795 867 IPR013083 -
Glsi11g1862 1042 SUPERFAMILY Protein kinase-like (PK-like) 356 601 IPR011009 -
Glsi11g1862 1042 Pfam Ring finger domain 819 862 IPR001841 -
Glsi11g1862 1042 PANTHER OS05G0588300 PROTEIN 9 607 - -
Glsi11g1862 1042 Pfam Protein kinase domain 357 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1862 1042 Gene3D Transferase(Phosphotransferase) domain 1 429 619 - -
Glsi11g1862 1042 ProSiteProfiles Leucine-rich repeat profile. 150 172 IPR001611 GO:0005515
Glsi11g1862 1042 CDD RING-H2_EL5-like 819 862 - -
Glsi11g1862 1042 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Glsi11g1862 1042 SUPERFAMILY RING/U-box 799 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1862 Glsi-ChrGlsi11 11654025 11660111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1862 28 606 Receptor kinase-like Gene Family AT1G68400 33.281 5.17e-84 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi11g1862 Pkinase 2.9e-21 CL0016