Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1858 ATGTATAGAATAATATCCACGCCGGCACATAAATTCCGCCAACTCGGGCACAACTCCAATCCCACCACCGACGAGGAACACGCCCATCACATTCTATGGCGTTATCAAATCCTCGATCCCGACAGCGACATTGTAGCACTTTGGAACAGGATCTTCCTCGTTACCAGTCTCATTGCGCTTTCCATAGATCCTCTTTATTTCTACCTACCCTATGTCGGAGGCCCGGGTTGCTTGCAAACGGATACCGAATTGAGCATCGTCGTCACTCTCCTACGCTCCTTTGCAGACCTTTTTTACGTCCTCCACATGATCATGAAGTTTCGCACCGCTTTTATCGCCCCCAATTCTAGGGTTTTTGGTCGTGGTGAGCTGGTTATGGATGCCCGAGAAATCGCCTTACGCTACTTGAAGACTGATTTTGTTGTTGATCTCGCCGCAACGCTTCCACTGCCCCAGATTGTCATTTGGGTAGTGATTCCAGCGTCAAGAAACTCAAGAGCCGATCATGCCAATAACACTCTTGCTCTTTTCGTTCTTATTCAGTATATTCCTAGACTGTTTCTTATCTTCCCTTTGAACCAGCGTATTGTGAAAACCTCTGGTGTTGTTGCTAAGACTCCCTGGATTGGAGCTGCGTACAATCTCATGCTGTACTTGCTAGCTAGTCATGTTGTAGGAGCAATTTGGTATCTATCCTCAGTAGGGCGACAATTTTCCTGCTGGAAATCGGAGTGCGATGAGGAGAATACTTCACAAAACTTGTCTTGTCTTTCTAGTTATCTTGATTGCAATAGTTTGTCAAGCTCTGATAGGGAATACTGGCTAAATGTCACCCATGTTGTTAGCAATTGCGATGCAAAGAACGGAAACAACAAATATAGTTTTGGGATGTTTGCAGATGCTTTCATAAAAGATGTTGCTTCTTCCAAATTCATTGAGAGATACTTCTATTGTCTGTGGTGGGGTTTAAGAAATTTAAGCTCATTTGGACAGAATTTGGACACCACCACATACCTTCTGGAGACAAATTTTTCCATCATCCTCTGCGTTGTTGGATTAGTTCTCTTTTCTCTTTTGATTGGAAACATGCAGACATATTTGGCGTCAATGTCAGTAAGACTTGAAGAATGGAGGATTAGGAAAAGAGATACTGAGGAGTGGATGAGGCATCGCCAGTTACCTCCAGAGTTGCAGGAACGTGTTCGTCGCTTTGTTCAATATAAATGGCTTGCGACGAGAGGAGTTAATGAAGAATCCATATTGCTTTCATTACCTTTGGATCTTCGTCGTGAAATTCAACGCCACTTGTGTCTTTCTCTTGTTCGGCGTGTCCCCTTCTTCTCACAAATGGACGATCAACTCCTTGATGCCATTTGTGAACGCCTTGTCTCGTCGTTAAATACAGAAGGCACCTACATTTTTCGGGAGGGTGATCCGGTGAATGAAATGGTGTTTATCATTAGAGGGCAACTGGAGAGCTCCACAACCAATGGAGGAAGGTCCGGGTTCTTCAATTCCATTACCCTCAGACCCGGTGACTTTTGCGGCGAGGAGTTATTGACATGGGCCTTAATGCCGAACTCTAGTTCAAACCTGCCTTCTTCTACTCGAACTGTCAGAGCTCTTACAGAAGTTGAAGCTTTTGCGCTACAGGCAGAGGATCTAAAATTTGTAGCAGGTCAGTTCAAGCGTCTTCACAGTAAGAAACTTCAGCATGCGTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGCTTCATAGAAGCTGCTTGGAGAAGATATAAAAAACGGAAAGCAACGAGGGAGTTATCCATAAAAGAGAGCCTCTACTACATGGCAAAACCAGAAAGTAGTTACAGCGACATGCTTGCAATTAGAAATAACGAAGATGAGACGGATGAGTCACTAGGGGATAGTGCCCCTAGCAAGCCTTATATTGGTCTTGGTGCTACTGTTTTGGCCTCAAAGTTTGCTGCAAATACAAGGAAAGGGACCAACCAGAAAGCTCAAGACAGTGATCCTGTGCCCCAATTGTTCAAGCCAGATGAACCTGATTTCTCTGTAGAGCATGAGGAGGTTTAA 2088 0.4449 MYRIISTPAHKFRQLGHNSNPTTDEEHAHHILWRYQILDPDSDIVALWNRIFLVTSLIALSIDPLYFYLPYVGGPGCLQTDTELSIVVTLLRSFADLFYVLHMIMKFRTAFIAPNSRVFGRGELVMDAREIALRYLKTDFVVDLAATLPLPQIVIWVVIPASRNSRADHANNTLALFVLIQYIPRLFLIFPLNQRIVKTSGVVAKTPWIGAAYNLMLYLLASHVVGAIWYLSSVGRQFSCWKSECDEENTSQNLSCLSSYLDCNSLSSSDREYWLNVTHVVSNCDAKNGNNKYSFGMFADAFIKDVASSKFIERYFYCLWWGLRNLSSFGQNLDTTTYLLETNFSIILCVVGLVLFSLLIGNMQTYLASMSVRLEEWRIRKRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVNEESILLSLPLDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLNTEGTYIFREGDPVNEMVFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSSSNLPSSTRTVRALTEVEAFALQAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACFIEAAWRRYKKRKATRELSIKESLYYMAKPESSYSDMLAIRNNEDETDESLGDSAPSKPYIGLGATVLASKFAANTRKGTNQKAQDSDPVPQLFKPDEPDFSVEHEEV 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1858 695 Gene3D Helix hairpin bin 370 437 - -
Glsi11g1858 695 FunFam Cyclic nucleotide-gated ion channel 1 444 562 - -
Glsi11g1858 695 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 23 688 - -
Glsi11g1858 695 SMART cnmp_10 446 577 IPR000595 -
Glsi11g1858 695 Gene3D - 51 369 - -
Glsi11g1858 695 ProSiteProfiles cAMP/cGMP binding motif profile. 446 576 IPR000595 -
Glsi11g1858 695 CDD CAP_ED 446 577 IPR000595 -
Glsi11g1858 695 Gene3D Jelly Rolls 444 564 IPR014710 -
Glsi11g1858 695 Pfam Ion transport protein 47 373 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi11g1858 695 SUPERFAMILY Voltage-gated potassium channels 39 368 - -
Glsi11g1858 695 MobiDBLite consensus disorder prediction 664 695 - -
Glsi11g1858 695 FunFam Cyclic nucleotide-gated ion channel 1 373 437 - -
Glsi11g1858 695 Pfam Cyclic nucleotide-binding domain 469 556 IPR000595 -
Glsi11g1858 695 SUPERFAMILY cAMP-binding domain-like 376 571 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1858 Glsi-ChrGlsi11 11632706 11636256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1858 31 695 Ion Channels AT5G14870 69.006 0.0 1007