Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1854 ATGAGCATAATCATATCAGTTGTGCTGCTGTTTGTGGGAGTTGGGTTTTTGGTCTTCCTTCATTTTTGCATCATTGGAAGAGCCTCTAGAAGAGAAGGCAGAGGAACAATGGTGGAAAAACCATGTCCAAAGATGACTTGGAGAAACTTCCTTGCTATAATTATAGCCAAAGACAATGCAAGCAGTCCTGTGGATTGCGCTGTTTGCTTGGAGAATCTTAGTACAGGGGATAAGTGCAGATTATTGCCTATGTGCAACCACAGCTTTCATGCCCATTGTGTGGATACATGGCTTCTTAAGACACCCATATGCCCAATTTGCAGCTCCAGTGCTGGCTCTATGATGGGGCAGCTCAGTCAAAAATTACAATGGCCCCTTCAGTGA 384 0.4427 MSIIISVVLLFVGVGFLVFLHFCIIGRASRREGRGTMVEKPCPKMTWRNFLAIIIAKDNASSPVDCAVCLENLSTGDKCRLLPMCNHSFHAHCVDTWLLKTPICPICSSSAGSMMGQLSQKLQWPLQ 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1854 127 Pfam Ring finger domain 65 107 IPR001841 -
Glsi11g1854 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 111 - -
Glsi11g1854 127 SUPERFAMILY RING/U-box 47 115 - -
Glsi11g1854 127 ProSiteProfiles Zinc finger RING-type profile. 66 108 IPR001841 -
Glsi11g1854 127 SMART ring_2 66 107 IPR001841 -
Glsi11g1854 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 114 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1854 Glsi-ChrGlsi11 11617421 11617804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1854 62 110 C3H Transcription Factor Family AT2G18650 57.143 1.06e-16 73.2