Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1851 ATGGAACTCACCGATTCCGGCGACGAACTCAGGGACAAGAATCTACCTCAAGATTCTCGCTCTGGACTCAGAATCGACCTCAATGAGATCCCCTCTCCTTCCTTTGCCGAAACCCTACCGGATTCCGTCGACATCGTACGCGCTTACCACGAAAACCCCGCGCCTCCTCCTGGCGCCCCTGCGGGGATTCCTGGAGATTTGCGCGGCTTTACTTGTGGTGCCTGTGGTAAGCCGGAGGTGCCGGGTCATGTTGTGGTCTGCGATGGCTGCGAGCGCGGCTACCATTTGGGCTGCGTGGGAATGCTTGGGCGCCAGAATGTAAGCCTCGATGAATGGGTTTGTGGAGAGTGTGTATCCAGTGGGGTGAAGAGTAAGCGCTGGCCATTGGGAGTCAAGTCTAAGCATCTTTTGGATATCAATGCTTCGCCACCCAGCGATGCTGACGGAGAGGGTAGTGAAGAATTGCAGGATTCAAGAAAGCACACTCTGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAGTGACATATTCTAACTTCTACAATGGGAGTGCTTTTGGCTTCCAAAAAGCATCAGGAGACGGTGTCACACATGCTGTTAGAGTGGGTTTGGAGGATGTATTGAATCATACCCAATCAATGACTAGAAGTTTTGAGGAGGTAGATATGGATTTCCCTCTTGGAAGGCATACAAATAGTAAAAGTACAGCTATTGGACTAACATCTGAGAGTTCAGGTGAGATATTTTTGCGGGCCCTCAGAGATTTTATATCTGAAAGGCATGGTGTTCTGGAGGAAGGTTGGAGAGTGGAGTTTAGACAATCAATGATCAGCTCTGAGCTGTATGCAGTTTACTGTGCACCAGATGGAAAGATCTTTGACTCTGTCTATGAAGTGGCTTCTTATCTGGGGTTGATGCCTGGCTACAATTCTAAGGAGTCCGATATAAGAAATGAGAGGCCTCTCTCTTCATTAGGCGGGTCTCATTTACCTAGAAAAAGAAAGTCAACTAGACTTCCAGTAGCCAATGGGTTTGCTGAAAAAAGGGGAAACTTTACCAGTAGTTGTCTTAAGGATCTGGTTTCTGATGCTGTTAGTGCGGATTGTTCTAATGCATGTGGAAACATATCAGAAGCCACTGTAATTGGAAGAAAAGAGGATGATCCCTCTGGCCAGCAATCTGCTGATGGACTTCCTTTACAGTTTGAAGATTTTTTTGTTCTTTCTTTTGGAAAAGTTGATGATAGACCTTCATATTTTGATGTTAACCTTATCTGGCCCATAGGTTATAAATCTTGTTGGCATGATAAAATTACTGGCTCCCTTTTTACATGTGAAGTTCTGGAGGGTGGTGATTCTGGACCTATATTTAGGGTCAGAAGGTGTTCCTGTTCTGAATATCCTCTTCCGGTTGGGTCGACCATCCTCTCAATGTCAAACCTTTGTCAATTTGTGAATCAAACCAATGAAGGACAGAGAAAGACGAATGATAGTATGGACTGGGATGGTGATGAAAGTATCCAGATGATCCTTTTAGACCCTCGCATGCCAACGGAAAATGATGTCTTGAGTTGTCTTGCAAGTTGCCCTAATGAAGCATTTGATAGTATTTCATCAGACATATTACAGCCTGTATCTGGTTCTGATCAAGATAAAACTAGAAATTTATTGTCTAATGACTTGGGTTTAATTGATGAGATTGGTGAGATTTTGGTGGAAGACCGTTCATCATCCTCAGCATGGAGAGATATTTCCCAAAAATTAGTCAATGCTTGCAAAGAAATCTGTAAGCAGAAAGGGACTCTAAAGTTTTATTGTAAACATGTTGAGAATGAAACATGCTTACATAAATGGTACATAAGGAATGGGAGCGAAATACACTCAACTTCATTGGCTAAATTTTGTGGTTCACCTGGTTCTGTCAGCATCCCTGCTGTAATTCATGCAGACAATGATCTGAAAAGTCTATATGAGGTCTTAAGAAAATGGTTGGAGCAAGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTACTAGAACTGCTTCCTGGTGTCCAAGGATTCTCACAGTATGAATTTCTGAATAGTAGAAGTAATAGCTCTTCATTGCCAACAGTTGGAAATGGGTTCTTAGTGGTTGATTGGAGAGGTGGATCACAATATCAGGAAGAAGAAGCAGTGCAAGGTTTATATAGGTGCCCCAAGAAAGTAAGATTGGCTAAAGAATGTGTTAAGGAAGATCATTGTCCACCTCCTGGGAAGCCACTATGCTCTAGGGTTCCTTGTGAACTTGTTGGTGATGTTTTCCAGGCTTGGGAGCTATTAGGGAGATTTCATGAAATTCTGGGCCTGAAAGAACCTTTGTCAGTGGATGAGTTGGAGAAGGAGCTCATCAACCCATGGTTTAATGGATCAGTTTTTCTTGAAAAACTTGAGAGAGATGGCAGTGGTGGATCGATTTTGTCCCCAAGCTGTGAAGCTGGCCCATCTGTTTCTGTGGAAAGCCCCCATTCATTCATTCAAGTGGAAACAGAAGCTATGAAAGAGGCGGCCCAAGTTAAGCTTGCATCTTTCACTTACAGCCGATGCTTTGGCGTAGCTTTGACCAAGGCTCATAATTCTTTGCTAGAAGTTCTAATAGGTGAACTGCAATCCAAGGTGGCTGCCCTAGTAGATCCAAATTTTGATGCCGGAGAGACAAGAACAAGACGTGGAAGAAGGAAAGATGTTGATAGTACAGTTCCTCCTAGACGAACCAAGCTTAATATGCTTCCTATCAATGAACTAACTTGGCCAGAATTGGCTCGTAGATACATATTGGCCCTCTTATCAATGGATGGTAACCTTGACTCTCCGGAGATTATTGCAAGGGAAAGTGGTAAAGTATTTCGCTGCTTACAAGGTGATGGTGGTTTGCTTTGTGGCTCCCTTACTGGTGTGGCTGGGATGGAAGCTGATGCACTGTTGCTTGCGGAGGCTACAAAGAAAATTTTTGGCTCTTTGATTAAAGACTATGATGTACTTACCATGGAAGATGAGGAATCTGTTGCAAAAGGTGCTAGTGAAATTTTTTTGCTGAATAATGGTAATATTCCAGAATGGGCACAGTTGCTAGAGCCTGTCAGAAAACTACCAACAAATGTGGGAACCAGAATCAGAAAGTGTGTTTATGATGCTTTGGCTAAGGATCCACCAGATTGGGCTAGGAAATTACTGGAACACTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCCGGACCAACAAAGAAAGCAGTTCTTTCTGTATTGGCTGATGTATGTGGTGAAGGAGTGCAACAGAAGCCCTATAAAGGAAGAAGAAAGAAAACTGTTATCTCTATTTCTGACATTATCATGAAACAATGTCGCATTGTATTACGCCGTGCTGCTGCTGCAGATGATGATAAAGTTTTTTGCAATTTGCTGGGACGAAAATTGATAAATTCTTCTGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTGTCTCGTCCTCTTGACTTTAGGACTATTGACCTACGATTGGCTGCTGGGGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGACGTCCATGAGCTGTGGAACAATATTCGTATTGCTTTTGGGGATCAACCTGATTTAGTTGAATTGGCTGAAGAATTATCTCAGAATTTTGAAATGCTGTATAATAAGGAGGTTGTTACCTATGTCCAAAGGTTTGTGGAATACGCTAAATTAGGATGCTTAAGTGCAGAAATGAGAAAAGAAGTTGAAAATTTGCTTGCATCAACAAGTGAAATTCCTAAAGCCCCTTGGGATGAAGAAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTTCTGCTATGTGATACCTGTGATGCTGAGTATCATACCTATTGCTTGAATCCTCCGCTCGCAAGGATCCCTGAAGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACAAGAAGTTCAAGATGTTTCAGAATGTAAGCAGCATATTGGCAAACGCCCAAGTAAAAAATTTCAGGGAGAGGTTACTTCTCTTTACTTGGAGGCTCTAACACATCTATTATCTGTAATGGAAGAGAAAGAATACTGGCAGTACAGTTTGAGCGAGAGAACTGTCCTCCTCAAGTTTTTATGTGATGAGGTTCTCAACTCTTCCCTCATACGCCAGCATCTTGAGCATTGTGCTGAGTTATCTGCTGAAGCACATCAGAAGTTGCGTGCACTTTCAGCAGAGTGGAAAAGCCTGAAAATGAAAGAAGATATATTATCCACTAAAGCTGCAAAAATCGACACAGGCTCTCTGATAACTGCTGGAGAAGTTAGTCTCAAGGAAGGGCTCACAGCGTCCCTGTCAAACCCTGGTAAATGCCTGGTTCAGCCTCATACTGCAAGTGACAGTCCCAGCAATTTTGAGCTAGTTACTGATAGTCTGCATTCAGAAGAGATAAGTAAAGAAAAAAATAGGTTCAACAGTGTCGATAAAAGTGTTTCTACAACAAATTTAGAGACTGACGATCAAAATATGAATCCCATAAGTGTTGATGGACAACTGACAAATGTCTGTGCAGCTGTGGATGGCAGTAAATTGCCTACAAATCATTTGTCCTGCCTGGATTCTCAATGTAGTGATAAATCGAATAAACCTTTTCCATTATCAAATCATGTGCCTCAAGAAATTAACAGCTCTGGTGGAGCATCTCATATGCAGGGTAACCAGCAGAAATGTGAGGGAAGGGATATATCTACTTATCAGCAAGGACAATGTGTCCCTTTTGATGTTCCTAAGGGTGCTGTGAATGAGTCAGAATCTTACCACCTTGAGCTCAGTGCCATCAAGCATGATATTTCACTCCTGCAGGACTCAATAACTAGTGTAGGATCACAGTTGCTGAAGCTTTCTGTTCGCCGGGAATTTTTGGGTATTGATTCCCTTGGTCGATTTTACTGGGCTTCAGCAATGCCTGGAGGATGTCCATGTCTAGTTGTTGATTCAAGTACTTCAGTGTTGCATGGGAAAAGAATGATCAACAGTAGAGACCCTGTGGACAAGTTTTCTGCCATGCAGAATTTCTTACTATCTGGTAGGGATGCCTATCAGATGTTAGGGGTGATGGACTCCCTTCCTTTAATGTCACTACCAAGTAATAACCTGGGCTTTAGTTCGCCGTGGGTTGTTTATCAAACTGATGCAGAAATCGAAGAGCTCTTAGGTTGGCTGAAGGATAATCACCCTAAAGAAAGAGAATTGAAAGATTCCCTTATGATGTGGCAGAAGTATAGATTCCAAGAGTTTATTCATACTCAGAATGAAGATCAGGTTGAGCCCCAAGAACATTTTTCTATGCCAGAAGATAGTGAGAAAACACTATCTAATTCTCTTGTTACGAAAGCGACCTCCTTGTTAGAGAAGAAATATGGCCCATTCATTGAGGGGGGTACTGTTGAGGTTTTGAAGAAGCGGGGTAAAAAGACAAGAACAACTAATGATGAAAAGCTGTATAGGTGTGAATGCCTAGAAGCCATATGGCCTTCTAGCCAACACTGCATGTCTTGTCACAAAACCTTTTTGAGTGATGTTGAACTGGAGGGACACAATGATGGAAAATGTAATGCAGGTTTGCCTGCTTTGGAGAAGAATAAAGATAATAGTGGGTTTACTAAAGGGAGAGGGAATTTGAAAAACGAGACCAACCATGAAAAATTCAGGGTTGATGCGGACAGTGGTGGAAACTCAGCAAATAGATGTTCTGAGCTTAACTCAAGATTGATTATGTTTTCAAATAAAGAATCAACATGCCCATATAACTTTGAAGATATCTGTTCCAAGTTTGTGACAAAAGATTCCAACAAGGAACTTGTTAAAGAAATAGGTCTTATTGATTCAGATGGGCTCCCATCCTTTGTTCCTTCCATATCTCCTTATGTTAGTGATTCTACAGTGAACCTAATATCAACTCAAAAGGATGATGCTGGTGGTGGTGGTGGTGGTGATGGGTCCAAGGCTTCTGAAGGGCAGGTTCCTCAAGGAAACACTGAAGGAACTGGCATGTGTCATGACCATATATCTGGCATTTCTATTGGAAGCTCAATTGCATATGAAAGCAATAAAGCAGGAAAATCCAGTAGATCAACTTTGGGATGTTCAGAACCAGGGAATGGGAAATCCTCTTTTCGTAGTCCTGCTTCAGAAATGGGGGTTGATGGCTGCTGTGTGGTACCTCTGTCTTCTTTGAGACCATTGGTTGGAAAAGTTTCACATATTTTGAGGCAACTGAAGATCAGTCTACTTGATATGGATGCTGCACTCCCTGATGTTGCTCTAAGACCATCAAAGGCACAGGTGGAAAGAAGACAGGCCTGGCGTTCATTCGTTAAATCTGCAGGGACTATATATGAGATGGTTCAGGCAACAATTACACTGGAGGACATGATTAAGACACAGCACTTGCGGAATGACTGGTGGTACTGGTCATCGCTTTCAGCTGCTGCCAAATCTTCTACTTTGTCATCCCTTGCCCTTCGCATATACTCCCTTGATTCAGCCATTATATATGAGAAAATGTCCAATTCAAGTTTTACTGACAACTCTGAACCTGCTGTGGTAGCTGAACAGAAAGCACTCACCACTTTGGATGCAGAGAAATCCAAAGCAAGCCGGAAGTCTAACAGGAAAAGGAAGGAACCAGATGTGAGGGCACCAGCACCCAGGAATCATGAAGATGCGTGCAATTTTGGAATGATTACTGCTGCAGCTGTAACATTGGTTGCTTGA 6813 0.4255 MELTDSGDELRDKNLPQDSRSGLRIDLNEIPSPSFAETLPDSVDIVRAYHENPAPPPGAPAGIPGDLRGFTCGACGKPEVPGHVVVCDGCERGYHLGCVGMLGRQNVSLDEWVCGECVSSGVKSKRWPLGVKSKHLLDINASPPSDADGEGSEELQDSRKHTLGDNSFGANPFGAPVTYSNFYNGSAFGFQKASGDGVTHAVRVGLEDVLNHTQSMTRSFEEVDMDFPLGRHTNSKSTAIGLTSESSGEIFLRALRDFISERHGVLEEGWRVEFRQSMISSELYAVYCAPDGKIFDSVYEVASYLGLMPGYNSKESDIRNERPLSSLGGSHLPRKRKSTRLPVANGFAEKRGNFTSSCLKDLVSDAVSADCSNACGNISEATVIGRKEDDPSGQQSADGLPLQFEDFFVLSFGKVDDRPSYFDVNLIWPIGYKSCWHDKITGSLFTCEVLEGGDSGPIFRVRRCSCSEYPLPVGSTILSMSNLCQFVNQTNEGQRKTNDSMDWDGDESIQMILLDPRMPTENDVLSCLASCPNEAFDSISSDILQPVSGSDQDKTRNLLSNDLGLIDEIGEILVEDRSSSSAWRDISQKLVNACKEICKQKGTLKFYCKHVENETCLHKWYIRNGSEIHSTSLAKFCGSPGSVSIPAVIHADNDLKSLYEVLRKWLEQDRFGLDVEFVQEVLELLPGVQGFSQYEFLNSRSNSSSLPTVGNGFLVVDWRGGSQYQEEEAVQGLYRCPKKVRLAKECVKEDHCPPPGKPLCSRVPCELVGDVFQAWELLGRFHEILGLKEPLSVDELEKELINPWFNGSVFLEKLERDGSGGSILSPSCEAGPSVSVESPHSFIQVETEAMKEAAQVKLASFTYSRCFGVALTKAHNSLLEVLIGELQSKVAALVDPNFDAGETRTRRGRRKDVDSTVPPRRTKLNMLPINELTWPELARRYILALLSMDGNLDSPEIIARESGKVFRCLQGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLIKDYDVLTMEDEESVAKGASEIFLLNNGNIPEWAQLLEPVRKLPTNVGTRIRKCVYDALAKDPPDWARKLLEHSISKEVYKGNASGPTKKAVLSVLADVCGEGVQQKPYKGRRKKTVISISDIIMKQCRIVLRRAAAADDDKVFCNLLGRKLINSSDNDDEGLLGSPAMVSRPLDFRTIDLRLAAGAYGGSHEAFLEDVHELWNNIRIAFGDQPDLVELAEELSQNFEMLYNKEVVTYVQRFVEYAKLGCLSAEMRKEVENLLASTSEIPKAPWDEEVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKQEVQDVSECKQHIGKRPSKKFQGEVTSLYLEALTHLLSVMEEKEYWQYSLSERTVLLKFLCDEVLNSSLIRQHLEHCAELSAEAHQKLRALSAEWKSLKMKEDILSTKAAKIDTGSLITAGEVSLKEGLTASLSNPGKCLVQPHTASDSPSNFELVTDSLHSEEISKEKNRFNSVDKSVSTTNLETDDQNMNPISVDGQLTNVCAAVDGSKLPTNHLSCLDSQCSDKSNKPFPLSNHVPQEINSSGGASHMQGNQQKCEGRDISTYQQGQCVPFDVPKGAVNESESYHLELSAIKHDISLLQDSITSVGSQLLKLSVRREFLGIDSLGRFYWASAMPGGCPCLVVDSSTSVLHGKRMINSRDPVDKFSAMQNFLLSGRDAYQMLGVMDSLPLMSLPSNNLGFSSPWVVYQTDAEIEELLGWLKDNHPKERELKDSLMMWQKYRFQEFIHTQNEDQVEPQEHFSMPEDSEKTLSNSLVTKATSLLEKKYGPFIEGGTVEVLKKRGKKTRTTNDEKLYRCECLEAIWPSSQHCMSCHKTFLSDVELEGHNDGKCNAGLPALEKNKDNSGFTKGRGNLKNETNHEKFRVDADSGGNSANRCSELNSRLIMFSNKESTCPYNFEDICSKFVTKDSNKELVKEIGLIDSDGLPSFVPSISPYVSDSTVNLISTQKDDAGGGGGGDGSKASEGQVPQGNTEGTGMCHDHISGISIGSSIAYESNKAGKSSRSTLGCSEPGNGKSSFRSPASEMGVDGCCVVPLSSLRPLVGKVSHILRQLKISLLDMDAALPDVALRPSKAQVERRQAWRSFVKSAGTIYEMVQATITLEDMIKTQHLRNDWWYWSSLSAAAKSSTLSSLALRIYSLDSAIIYEKMSNSSFTDNSEPAVVAEQKALTTLDAEKSKASRKSNRKRKEPDVRAPAPRNHEDACNFGMITAAAVTLVA 2270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1851 2270 ProSitePatterns Zinc finger PHD-type signature. 72 117 IPR019786 -
Glsi11g1851 2270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 120 IPR013083 -
Glsi11g1851 2270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1282 1329 IPR013083 -
Glsi11g1851 2270 MobiDBLite consensus disorder prediction 2055 2076 - -
Glsi11g1851 2270 SUPERFAMILY FYVE/PHD zinc finger 69 129 IPR011011 -
Glsi11g1851 2270 MobiDBLite consensus disorder prediction 1 19 - -
Glsi11g1851 2270 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 256 323 IPR001739 GO:0003677
Glsi11g1851 2270 ProSiteProfiles Zinc finger PHD-type profile. 69 120 IPR019787 -
Glsi11g1851 2270 SUPERFAMILY DNA-binding domain 258 323 IPR016177 GO:0003677
Glsi11g1851 2270 ProSiteProfiles Bromodomain profile. 1173 1221 IPR001487 GO:0005515
Glsi11g1851 2270 ProSiteProfiles FYR domain FYRC motif profile. 556 698 IPR003889 GO:0005634
Glsi11g1851 2270 ProSiteProfiles FYR domain FYRN motif profile. 399 452 IPR003888 GO:0005634
Glsi11g1851 2270 MobiDBLite consensus disorder prediction 2225 2250 - -
Glsi11g1851 2270 Pfam Bromodomain 1171 1225 IPR001487 GO:0005515
Glsi11g1851 2270 MobiDBLite consensus disorder prediction 1999 2032 - -
Glsi11g1851 2270 SMART PHD_3 1282 1328 IPR001965 -
Glsi11g1851 2270 SMART PHD_3 71 118 IPR001965 -
Glsi11g1851 2270 MobiDBLite consensus disorder prediction 2055 2073 - -
Glsi11g1851 2270 CDD PHD_SF 71 117 - -
Glsi11g1851 2270 Gene3D - 400 509 - -
Glsi11g1851 2270 MobiDBLite consensus disorder prediction 1 27 - -
Glsi11g1851 2270 CDD PHD1_Lid2p_like 1282 1327 - -
Glsi11g1851 2270 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1362 1406 IPR028942 -
Glsi11g1851 2270 SUPERFAMILY FYVE/PHD zinc finger 1268 1334 IPR011011 -
Glsi11g1851 2270 SUPERFAMILY Bromodomain 1117 1237 IPR036427 GO:0005515
Glsi11g1851 2270 MobiDBLite consensus disorder prediction 138 167 - -
Glsi11g1851 2270 Gene3D - 1124 1245 IPR036427 GO:0005515
Glsi11g1851 2270 Pfam PHD-finger 1282 1328 IPR019787 -
Glsi11g1851 2270 Pfam PHD-finger 72 119 IPR019787 -
Glsi11g1851 2270 PANTHER OS02G0192300 PROTEIN 13 2240 - -
Glsi11g1851 2270 Pfam Methyl-CpG binding domain 257 309 IPR001739 GO:0003677
Glsi11g1851 2270 ProSitePatterns Zinc finger PHD-type signature. 1283 1327 IPR019786 -
Glsi11g1851 2270 ProSiteProfiles Zinc finger PHD-type profile. 1280 1330 IPR019787 -
Glsi11g1851 2270 MobiDBLite consensus disorder prediction 2225 2252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1851 Glsi-ChrGlsi11 11584026 11597303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1851 1 2243 C2H2 Transcription Factor Family AT3G01460 46.053 0.0 1794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi11g1851 Bromodomain 4.2e-05 No_clan