Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1849 ATGGAGTCCGGCCGTTTTTTCTTCGACACTTCCGCTTCCTGCGGGAATATGCTGTTCCTCGGGAATGGTGATATCGGATTTCGAGGAAGTTCGATGATAAGCATGGACGAAACATCAAAGAAGCGACCTTTCTTCTGCTCACCGGAGGAACTGTTTGACGAGGAATATTACGATGAGCAGCTGCCGGAGAAGAAGCGCCGCCTCACTCCCGAGCAGGTTCATCTGTTGGAGAAAAGCTTTGAAGCGGACAACAAACTGGAGCCAGAACGGAAGACCCAGTTGGCCAAGAATCTGGGATTGCAGCCAAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGGTGGAAGAACAAGCAACTTGAAAGAGATTTTGATACTCTCAAGTCTTCCTATGATTCACTGCTTTCGAAGTATGATTTCATTGAGAAGGAGAATGAAAGGCTTAAATCTGAGGTGGTATTCTTAAATGAGAAGCTTCAAGCAACGGACATGCCCGGAGCACCAATATCAGATCAAAAAACTGACCCACTTCCAGTTGATATAGCCCAAATTTCAGCCATACCACTCAGCATGAGGTTGGAGGACCGCCTGAGTGCTGGGAGTGTTGGAAGCGTAGTGGTGGACGAGGATAGTCCACAGCTTGTTGTGGACAGTGTTGATTCGTACTTTCAGGCTGACAATTATGCCGGATGCATGGCCGGAGTCAATAGGGTTCAGCCGGAGGAGGATGATGGAAGTGATGATGGTCGGAGTTATTTCTCAGATGTGTTTGTGGCTCCTGAACCAGAGCAGCAAAACCATGAAGAAGGAGAGGCGCTGGGTTGGTGGGTATGGTCTTAA 843 0.4911 MESGRFFFDTSASCGNMLFLGNGDIGFRGSSMISMDETSKKRPFFCSPEELFDEEYYDEQLPEKKRRLTPEQVHLLEKSFEADNKLEPERKTQLAKNLGLQPRQVAVWFQNRRARWKNKQLERDFDTLKSSYDSLLSKYDFIEKENERLKSEVVFLNEKLQATDMPGAPISDQKTDPLPVDIAQISAIPLSMRLEDRLSAGSVGSVVVDEDSPQLVVDSVDSYFQADNYAGCMAGVNRVQPEEDDGSDDGRSYFSDVFVAPEPEQQNHEEGEALGWWVWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1849 280 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Glsi11g1849 280 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Glsi11g1849 280 CDD homeodomain 64 120 IPR001356 GO:0003677
Glsi11g1849 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 202 IPR045224 GO:0003700
Glsi11g1849 280 Gene3D - 58 126 - -
Glsi11g1849 280 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Glsi11g1849 280 SUPERFAMILY Homeodomain-like 58 121 IPR009057 -
Glsi11g1849 280 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Glsi11g1849 280 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Glsi11g1849 280 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Glsi11g1849 280 SMART HOX_1 62 123 IPR001356 GO:0003677
Glsi11g1849 280 Coils Coil 118 159 - -
Glsi11g1849 280 Pfam Homeodomain 64 118 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1849 Glsi-ChrGlsi11 11579619 11581828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1849 1 279 Homeobox Transcription Factor Family AT3G01470 55.822 2.41e-93 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi11g1849 Homeodomain 3.1e-18 CL0123