Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1846 ATGAAGGAGAAGAGTGAAAGTGGGGGTGGTGGGTATGTGAGAGCAGATCAGATCGATCTGAAAAGCTTGGACGAGCAGCTTCAGAGGCATCTGACCAGAGCATGGACCATGGAGAAGAGCAAGAAAAAAGAAGATGAGTATGAAGGAAGGTCTACAGGAACCAGGCAAGAATGGGAGATTGACCCCTCCAAGCTCATAATCAAGAGCGTCATTGCTCGTGGCACTTTTGGCACCGTTCATCGTGGCATTTATGATGGCCAAGATGTTGCAGTTAAGCTCCTTGACTGGGGAGAAGAGGGCCATCGTTCAGAAGCTGAAATAGCTTCTCTGAGAGCAGCTTTTACACAAGAAGTTGCTGTTTGGCACGAGCTTGACCATCCTAATGTAACCAAGTTTATTGGGGCAATAATGGGTGCATCAGAGCTTCACATACAAGCAGAAAATGGTCATATAGACATGCCCAGTAATGTTTGTTGTGTTATTGTTGAATATTGTCCTGGGGGTGCCCTGAAGTCTTATCTCATAAAAAACCGGAGAAAGAAGCTGGCATTTAAAGTGGTTGTCCAACTGGCACTTGATCTTGCAAGAGGGTTGAGCTATCTTCACTCAAAAAAGATTGTCCACAGAGACGTTAAAACAGAAAATATGCTTCTGGACAAGACTCGAACCTTGAAAATAGCTGATTTTGGAGTAGCTCGTATTGAGGCTTCTAATCCTCATGATATGACTGGTGAAACTGGAACCCTTGGTTACATGGCTCCTGAGGTTCTAAATGGTAATCCATATAATAGAAAGTGTGATGTGTACAGTTTTGGAATATGCTTATGGGAGATATATTGCTGTGACATGCCATATCCAGACCTTAGCTTCTCAGAAGTGACATCAGCTGTTGTTCGTCAGAATCTGAGGCCAGAGATGCCCCGTTGTTGCCCAAGCTCTCTGGCAAATGTAATGAAAAGATGCTGGGATGCCAATCCTGATAGGCGACCAGAAATGGATGAGGTGGTGTCCATGTTGGAAGCAATTGACACTTCAAAGGGTGGAGGTATGATCCCTCATGATCAGCCTCAGGGTTGTCTTTGTTTCCGCAGTTATCGAGGACCTTGA 1107 0.449 MKEKSESGGGGYVRADQIDLKSLDEQLQRHLTRAWTMEKSKKKEDEYEGRSTGTRQEWEIDPSKLIIKSVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHELDHPNVTKFIGAIMGASELHIQAENGHIDMPSNVCCVIVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSKKIVHRDVKTENMLLDKTRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEMPRCCPSSLANVMKRCWDANPDRRPEMDEVVSMLEAIDTSKGGGMIPHDQPQGCLCFRSYRGP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1846 368 SMART serkin_6 65 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1846 368 ProSiteProfiles Protein kinase domain profile. 65 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1846 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Glsi11g1846 368 PIRSF ILK 21 348 - -
Glsi11g1846 368 Gene3D Transferase(Phosphotransferase) domain 1 165 351 - -
Glsi11g1846 368 PRINTS Tyrosine kinase catalytic domain signature 266 288 IPR001245 GO:0004672|GO:0006468
Glsi11g1846 368 PRINTS Tyrosine kinase catalytic domain signature 162 175 IPR001245 GO:0004672|GO:0006468
Glsi11g1846 368 PRINTS Tyrosine kinase catalytic domain signature 310 332 IPR001245 GO:0004672|GO:0006468
Glsi11g1846 368 PRINTS Tyrosine kinase catalytic domain signature 200 218 IPR001245 GO:0004672|GO:0006468
Glsi11g1846 368 Pfam Protein tyrosine and serine/threonine kinase 67 339 IPR001245 GO:0004672|GO:0006468
Glsi11g1846 368 FunFam Serine/threonine-protein kinase HT1 165 350 - -
Glsi11g1846 368 FunFam Kinase suppressor of Ras 1 54 149 - -
Glsi11g1846 368 SUPERFAMILY Protein kinase-like (PK-like) 50 339 IPR011009 -
Glsi11g1846 368 Gene3D Phosphorylase Kinase; domain 1 54 148 - -
Glsi11g1846 368 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 342 - -
Glsi11g1846 368 CDD STKc_MAP3K-like 71 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1846 Glsi-ChrGlsi11 11560478 11565068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1846 14 368 MAP Kinase Kinase Kinase AT3G22750 68.975 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi11g1846 PK_Tyr_Ser-Thr 2.7e-64 CL0016