Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1836 ATGCTCTCTCTTCAATTCACCGCCACCAGAGGTCTCGATCGTCCTTCGCCACTGCTGCTGAGCAGCAGCTCTTCTTCATTTTGGGGGAGAGATCGGTCCTTGCTCAAAGTAAGTTCTGCAGTTACTGGTAGAGAGAAGCTTCGATTCAATGACGGAAACTTTAGGGTTTTCGCAATGTCTGGTAATTCTTCCGCATTCAAGATAAATCTGAACGAGTATCTGGTCACTCTGGAGAAACCACTTGGTATCCGGTTTGCTCTCACAGCTGAGGGTAAAATTATCGTTCACTCCCTCAAGAAAGGGGGTAATGCAGAGAAGTCAAGGATCATTTTGGTTGGTGACACTTTGAAGAAAGCCGGCGGTTCATCTCAAAACAGGCTTGTCGAAATCAAAGACTTTGGAGATACACAGAAGGTTCTAAAGGAGCAAACAAAATCTTTTAGCTTGGTTCTCGAGAGGCCCACTTCTCCTTTTCCAATTCAACTACTGCATAAGATGAATGGTTTTGAAATACTATTTAATAGAGGTCGAGTTCCTATTACCACCTGGAACAAGACACTATTGGCATCAAATTTACAGCCATCTACTGAGAGCTCGGGGAATTCTGGTTTTTTAATCTTCAACTCAAAGTTTCTAACATCAAAAGGAAGCAAGCTATTGGACAATAAAAATGAACATGTCATCCCCCATGAGGTGAGAAACTTCTTTTCTGAACCCATGGTTCAGCTTGCTTGTGTCTTTACTGAAGAAGAGAATGAAGATGGAGAATGGGCTCATGGAAGTTTCCCCCTTGAAGAATATATTCAAGCTCTAGATCGGTCCAAGGGTGAAATGTACTACGATCACTCCCTTGGTATGCGCTATGTTAAGATTACGGAGCAAATATATGTGGGATCTTGTATACAAACAGAAGCTGATGTGGAAACCTTGTCGAAAGTTGAGGGAGTCACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAGAACTGGGGAATTGATTTAAAAGCGATTAATGACTCATGTCAAAGGAATAATATCCTCATGATCAGCTATTCTATACGGGAAGGAGATTCTTATGATTTGAGGAAGAAATTACCACTTTGTGTGGGGCTTTTTTTACGGTTGCTGAAGAAGAATCACCGAGTTTTTGTTACTTGTACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATACCTACACTGGATGACAGATCTTTCCCTTCACGCAGCTTATACTTGGGTCACTGGGATGTACACATGCAGGCCTGACAGGCCGGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAAGGGTAACCATGATGGACCTCCAACACATGCTGTTACATTTGTGTGGAATGGGCATGAGGGAGAGGATGTTACTTTAGTGGGAGATTTTACGGGAAATTGGAAAGAACCACTCAGGGCAATACACAAGGGTGGAATAAGATACGAAGTAGAAGTTAAACTTCCACAGGGAAAGTACTACTATAAGTTTATTGTTAACGGACAATGGAGGCATTCAACAGCTTCACCAGCAGAAAGAGATGAAAGTGGGAACGTTAACAATGTCATTGTGATTGGTGATACTGCAAGTGTTCGGCCTTCTGTCCAACACCAGCAGAAAGATGCCAACATTGTAAAGGTGATCGAGAGGCCTTTGAATGAACAAGAGCGGTTTAAGCTGGCAAAAGCAGCTCGCTGTATGGCTTTCAATGTTTGTCCTATCAGATTAGCTCCCAAGTCCCAAATAGTTGGATAG 1779 0.4283 MLSLQFTATRGLDRPSPLLLSSSSSSFWGRDRSLLKVSSAVTGREKLRFNDGNFRVFAMSGNSSAFKINLNEYLVTLEKPLGIRFALTAEGKIIVHSLKKGGNAEKSRIILVGDTLKKAGGSSQNRLVEIKDFGDTQKVLKEQTKSFSLVLERPTSPFPIQLLHKMNGFEILFNRGRVPITTWNKTLLASNLQPSTESSGNSGFLIFNSKFLTSKGSKLLDNKNEHVIPHEVRNFFSEPMVQLACVFTEEENEDGEWAHGSFPLEEYIQALDRSKGEMYYDHSLGMRYVKITEQIYVGSCIQTEADVETLSKVEGVTAVLNFQSGTEAENWGIDLKAINDSCQRNNILMISYSIREGDSYDLRKKLPLCVGLFLRLLKKNHRVFVTCTSGFDRSPACVIAYLHWMTDLSLHAAYTWVTGMYTCRPDRPAIAWATWDLIAMVEKGNHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLRAIHKGGIRYEVEVKLPQGKYYYKFIVNGQWRHSTASPAERDESGNVNNVIVIGDTASVRPSVQHQQKDANIVKVIERPLNEQERFKLAKAARCMAFNVCPIRLAPKSQIVG 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1836 592 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 279 419 IPR029021 -
Glsi11g1836 592 CDD E_set_AMPKbeta_like_N 454 533 - -
Glsi11g1836 592 Gene3D Protein tyrosine phosphatase superfamily 280 547 IPR029021 -
Glsi11g1836 592 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 585 - -
Glsi11g1836 592 ProSiteProfiles PDZ domain profile. 74 155 IPR001478 GO:0005515
Glsi11g1836 592 SUPERFAMILY E set domains 451 534 IPR014756 -
Glsi11g1836 592 Pfam Glycogen recognition site of AMP-activated protein kinase 454 535 IPR032640 -
Glsi11g1836 592 CDD DSP_laforin-like 286 432 IPR045204 GO:0019203
Glsi11g1836 592 SUPERFAMILY PDZ domain-like 79 164 IPR036034 GO:0005515
Glsi11g1836 592 Gene3D Immunoglobulins 441 537 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1836 Glsi-ChrGlsi11 11494664 11499905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1836 139 588 Protein tyrosine phosphatase (PTP) family AT3G01510 68.444 0.0 657