Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1828 ATGGACCAAAAACTGTGCAACTCGTCTCTGGATGCTGAAGTGAGAAAGGGGCCGTGGACTATGGAAGAAGACTTGATCTTGATCAACTATATCGCAAATCATGGCGAAGGTGTCTGGAACTCCTTAGCCAAAGCTTCAGGTCTTAGACGTACAGGAAAGAGTTGCCGGCTCCGGTGGCTGAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCAGAGGAAGAGCTTTTGATCATGGAACTTCATTCAAAGTGGGGAAACAGATGGTCCAAGATTGCGAAGCATCTACCCGGAAGAACTGACAATGAGATTAAGAACTACTGGAGGACAAGGATCCAGAAGCACATTAAGCAAGCTGAGAACTTTCAACAGCAACAGAGCTCTGAGGCATATGATCAAGGAAGCTCTAGCCAAGTGTGTACCATGGGAGAACCAATGGAGATGAACTACTCTCCACCCTCATACCAAGGAACTTTGGAACCTTTTCCAACTGATCAGTTCCCTGGAATCCCTGATCATTCCGCCAGTTGTTGTACCGGTGACAACAACTATTGGAGCATGGAGGATCTCTGGTCTATGCAACTACTTAATGGGGATTAA 606 0.4637 MDQKLCNSSLDAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKASGLRRTGKSCRLRWLNYLRPDVRRGNITPEEELLIMELHSKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENFQQQQSSEAYDQGSSSQVCTMGEPMEMNYSPPSYQGTLEPFPTDQFPGIPDHSASCCTGDNNYWSMEDLWSMQLLNGD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1828 201 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Glsi11g1828 201 FunFam Myb-related protein 305 73 141 - -
Glsi11g1828 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Glsi11g1828 201 Gene3D - 73 140 - -
Glsi11g1828 201 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Glsi11g1828 201 CDD SANT 73 112 IPR001005 -
Glsi11g1828 201 SMART sant 15 65 IPR001005 -
Glsi11g1828 201 SMART sant 68 116 IPR001005 -
Glsi11g1828 201 FunFam Myb transcription factor 16 68 - -
Glsi11g1828 201 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 131 IPR044676 GO:0003700|GO:0006355|GO:0043565
Glsi11g1828 201 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Glsi11g1828 201 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Glsi11g1828 201 CDD SANT 18 63 IPR001005 -
Glsi11g1828 201 Gene3D - 16 68 - -
Glsi11g1828 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Glsi11g1828 201 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1828 Glsi-ChrGlsi11 11438954 11442600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1828 11 201 MYB Transcription Factor Family AT3G01530 57.500 1.45e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g1828 Myb_DNA-binding 2.3e-14 CL0123