LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g1822	ATGGAGACACCTGTCAATGGAGTTGAGTCTTTTTCAGAGGTTCATAATTCAGTTTCTGCAGTCGATGACAATCCTCCTTCGACAACTTGGACTCCTCAGCCCTCCCGGCCTCCCCTAAGAGCATCTAGAAATCATGGAGTTTCTTCTACATCCTATCTGACTGGTCATCATGACTATGGAACGAAGACCATCCGCGATCGCAAGAGTTATGTAATTAATCAAAAGCATTCCTATCAGGAGGCCAACAATGTGCGGCACCGAGAATCACCAAATATGTCAAAACAGTACTACAAATGTGGTGGAAAATCTGGCTATGTGAGCCACAATGAAACTGGAGAAACTTGTTCGGGGGAGAAAGTCTCTACGATGGAACCATTTAATGATTCCAAAAATTGTGATTCAAATATCATATTAGAATCTGACAATTTCTTCTTGGGTCCATCAAAAGGAGTTTATCAAATAAAGAGTTACTGTCAATCAGAGTTTACTTTTCGTCGAAGTCCTCGGAATAGTTTCTATTCTGCCACTGCCTATTCAGAAGCCAAACAAAGTTTTACTAATACTGACGTCAGTGAATGTGTTAGTGTCGATAGGTCAGGTGAAAGAAGCGAAGTTACTGATTCCTGTTGTTTCAACGAGAGCAGGAAGCCCAGCATCTGTAGAGAGAGCACTGGAAGTGATGTTAGTGATGAGAGCAGCACCAGTACTTTGAGCAGTGCCCTGTATAAACCCCACATGGCAAATGATATAAGATGGGAAGCAATTCAAGCCATCCGAGCTATTGATGGGATGTTGGAAATGAGACATTTCAGGTTGTTGAAGACATTGGGATGTGGAGACATAGGAAGTGTTTATCTAGCAGAATTGACCGGCACGAGGACTTGTTTTGCCATGAAAATTATGAATAAAATAGAACTGGCAAGTCGCAAGAAGCTTCTGGGGTCTCAGACAGAAAGAGAGATATTGCAGTCTCTGGATCATCCATTTCTACCCACATTATATACACACTTTGAGACTGAAACATTCTCTTGCTTGGTAATGGAGTTCTGCCCTGGTGGGGACCTGCATGCAGTCAGGCAAAGACAACCTGGGAAATATTTTTCAGAGCATGCTGCCAGGTTCTATGTGGCTGAAGTTCTTCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTTAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCATATAATGCTGTCTGATTTTGACCTCTCTCTGAGGAAGTTGCTTCATCATGAACTGGATTCTTTTGTTTTTGGCCAATATCATGAACTGAATTCAACTCAAGGTGTATCCCTTCTATCTACTTTTGGTGCGTTCCATTTTTTACTTCAATCTAATCGTTCCTGCCGATATTGCACAGTCCACATGGCCGCTCATAAGATAGCACATGCTGCATATCAGGGACCTAGTGTGGTGAGGGAGATCTTCTATGGAACAAGCCTTGGTCTCTTGGCAGGTGGCCTTTGGAAGATGCATCACTGGAATAACCAGAGGAGAACCAAAGAATTCTATGATCTACTTGAGAAAGGTGAAATTAGTGTTGTCGTGGAGGAGGAGTAG	1599	0.4278	METPVNGVESFSEVHNSVSAVDDNPPSTTWTPQPSRPPLRASRNHGVSSTSYLTGHHDYGTKTIRDRKSYVINQKHSYQEANNVRHRESPNMSKQYYKCGGKSGYVSHNETGETCSGEKVSTMEPFNDSKNCDSNIILESDNFFLGPSKGVYQIKSYCQSEFTFRRSPRNSFYSATAYSEAKQSFTNTDVSECVSVDRSGERSEVTDSCCFNESRKPSICRESTGSDVSDESSTSTLSSALYKPHMANDIRWEAIQAIRAIDGMLEMRHFRLLKTLGCGDIGSVYLAELTGTRTCFAMKIMNKIELASRKKLLGSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHAVRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRKLLHHELDSFVFGQYHELNSTQGVSLLSTFGAFHFLLQSNRSCRYCTVHMAAHKIAHAAYQGPSVVREIFYGTSLGLLAGGLWKMHHWNNQRRTKEFYDLLEKGEISVVVEEE	532

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g1822	532	SUPERFAMILY	Protein kinase-like (PK-like)	244	418	IPR011009	-
	Glsi11g1822	532	MobiDBLite	consensus disorder prediction	18	57	-	-
	Glsi11g1822	532	Gene3D	Transferase(Phosphotransferase) domain 1	354	419	-	-
	Glsi11g1822	532	Pfam	Protein kinase domain	271	429	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g1822	532	FunFam	Serine/threonine-protein kinase D6PK-like	268	353	-	-
	Glsi11g1822	532	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	391	403	IPR008271	GO:0004672\|GO:0006468
	Glsi11g1822	532	MobiDBLite	consensus disorder prediction	18	60	-	-
	Glsi11g1822	532	ProSiteProfiles	Protein kinase domain profile.	270	532	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g1822	532	SMART	serkin_6	270	475	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g1822	532	PANTHER	FLIPPASE KINASE 1-RELATED	92	425	-	-
	Glsi11g1822	532	Gene3D	Phosphorylase Kinase; domain 1	268	353	-	-
	Glsi11g1822	532	FunFam	serine/threonine-protein kinase D6PK-like	354	421	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g1822	Glsi-ChrGlsi11	11396629	11404571	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g1822	176	426	AGC Kinase Gene Family	AT5G47750	68.651	3.58e-111	341

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Glsi11g1822		Pkinase	4.4e-36	CL0016