Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1821 ATGGACTCACCCGCCGTCGATGGAGAGACCTACGATGTCAGGTCCTTTTCCCACAGACAAGAAGACGTGGAGAAGTCCCATCCTCATACGGGCGATGGAGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCACAATTTATCAAGCACTTTGGTAAATATGGTGAGATTACGGATTCTGTGATAATGAAGGACCGGAAAACTGGGCAACCTCGAGGATTTGGGTTTATAACTTATGCAGATCCCTCTGTTGTTGATAAAGTTATTGAGGACACTCATATTATCAACGGCAAACAAGTGGAAATTAAGCGGACAATACCAAGGGGAGCAGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTCGTTGGTGGAATTCCTTCAACTGTGACTGAAGATGAATTTAGAGACTTCTTCACACACTATGGAGAGGTCAAAGATCACCAAGTAATGCGAGACCATGCCACCAACCGTTCTCGTGGCTTTGGGTTTATAACCTTTGACTCTGAGGAAGCTGTTGAAGAACTTTTAGCCAATGGGAACAAGATTGAGTTTGCGGGGACTCAGGTGGAAATCAAGAAGGCTGAGCCAAAGAAGCCAAATCCACCACCTCCACCATCCAAGCGCTATAATGACTCTAGGTCATCTTCATATGGTAGTGGATACGGCGATGCTTATGATGGATTTAGTGGCAGCTTTGGTGTTGGGGATTATAGGTCGGGTGGTGTCTATGGTGGTAGGGGTGGTGCCTATGGTGGCTTTGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGCCATGGGGTCCTATAGAGGAGACCCTTCCCTTGGGTATTCGGGTCGATATGGAGGAGGCTTTAGTAGAGGCTATGATCTTGGTGGGTATGGTGGACATAGTGAAACCTATGGGGGATATGGTGGTGGTGGTGGTGGTTCTTCTGGTGGTGCTTACGGAAGCAGTTATGATGCCAGCCTAGGGGGTGGATATGGAGCGGGTAGTGGAAGTTCTTTTTATGGGAGCAGAGGGGGATATGGTGGTGCTGGGACTGGTCGATATCATCCTTATGGAAGATAG 1095 0.4721 MDSPAVDGETYDVRSFSHRQEDVEKSHPHTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTHYGEVKDHQVMRDHATNRSRGFGFITFDSEEAVEELLANGNKIEFAGTQVEIKKAEPKKPNPPPPPSKRYNDSRSSSYGSGYGDAYDGFSGSFGVGDYRSGGVYGGRGGAYGGFGSEFGGYGGYAGAMGSYRGDPSLGYSGRYGGGFSRGYDLGGYGGHSETYGGYGGGGGGSSGGAYGSSYDASLGGGYGAGSGSSFYGSRGGYGGAGTGRYHPYGR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1821 364 MobiDBLite consensus disorder prediction 1 37 - -
Glsi11g1821 364 SUPERFAMILY RNA-binding domain, RBD 33 115 IPR035979 GO:0003676
Glsi11g1821 364 SMART rrm1_1 38 109 IPR000504 GO:0003723
Glsi11g1821 364 SMART rrm1_1 126 199 IPR000504 GO:0003723
Glsi11g1821 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 113 IPR000504 GO:0003723
Glsi11g1821 364 Gene3D - 125 208 IPR012677 -
Glsi11g1821 364 MobiDBLite consensus disorder prediction 198 222 - -
Glsi11g1821 364 FunFam Heterogeneous nuclear ribonucleoprotein 1 36 117 - -
Glsi11g1821 364 Gene3D - 37 116 IPR012677 -
Glsi11g1821 364 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 18 364 - -
Glsi11g1821 364 SUPERFAMILY RNA-binding domain, RBD 123 229 IPR035979 GO:0003676
Glsi11g1821 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 106 IPR000504 GO:0003723
Glsi11g1821 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 196 IPR000504 GO:0003723
Glsi11g1821 364 FunFam Heterogeneous nuclear ribonucleoprotein 1 118 239 - -
Glsi11g1821 364 MobiDBLite consensus disorder prediction 12 31 - -
Glsi11g1821 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1821 Glsi-ChrGlsi11 11387994 11392164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1821 19 184 Eukaryotic Initiation Factors Gene Family AT1G71770 26.087 5.90e-14 71.2