Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1819 ATGGCTGGGTTGGAGGAATTGAGAAAAAAGCTCGCACCTTTGTTTGATGCTGAGAAGGGCTTCTCAACAGGTTCAACCTTGGACCCTTGTGATTCGTACACACTATCGGATGGTGGGACTGTTAACTTATTGAGCAGATCATATGGGGTGTATAATATCAACGAGCTCGGATTGCAAAAGTGTACGTCTCGATCTGTAGATGAAACTGATCACAGTGAAAAAACATATCGATGTGCTTCCCACGAGATGAGAATATTTGGAGCAATAGGTAGTGGTGCCAGTAGTATAGTGCAGAGAGCTATACATATACCAACACATAGAATTATAGCATTGAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTTCTTACCGAAATAAGGACATTATGCGAAGCACCTTGTTACCAGGGTCTTGTTGAATTCCATGGGGCATTCTATACCCCAGACTCTGGACAGATAAGCATAGCTTTGGAGTACATGGATGGAGGATCACTTGCAGATATCTTACGAATCCATAGAAGAATACCTGAACCTATTCTTTCATCCATGATTCAGAAGCTCCTACATGGGCTAAGCTATCTGCATGGAGTCAGACATTTAGTTCACAGAGACATAAAACCAGCCAATTTACTTGTAAATCTCAAGGGGGAACCAAAAATTACTGATTTCGGTATTAGTGCTGGCTTAGAGAATTCAGTGGCAATGTGTGCTACATTTGTTGGAACCGTGACATACATGTCACCTGAGCGAATTCGAAATGAAAGCTATTCTTTTCCTGCTGATATATGGAGCCTTGGTCTTGCTCTCCTTGAGTGTGGAACAGGAGAATTCCCATATACAGCTAATGAGGGTCCTGTCAATCTTATGTTGCAGATCCTGGATGATCCATCGCCATCGCCATCAAAACACAAGTTTTCACCTGAATTCTGCTCCTTTGTTGATGCTTGCTTACAGAAGGATCCAGATGCCAGGCCAACAGCAGAGCAGCTGCTTTTGCACCCCTTTATCACAAAGTATGAGAATGCCAGGGTAGATTTAGCTGGATTTGTTCAAAGTGTATTTGATCCAACACAACGAATGAAGGACTTGGCTGATATGTTGACAATTCATTATTACTTACTATTTGATGGACCTGATGATCTCTGGAAACATACAAGAAGCTTATATAATGAAGGTTCAACTTTCAGTTTCTCTGGGGAACAGTATGTTGGTCCGAACAATATTGTTACAAAACTTTCAAGTATCCGAAGTACATTAGTTGGTGACTGGCCTCCTGAAAAGCTGGTGCATGTTGTTGAAAAGCTCCAATGCCGTGCCCATGGTGAAGATGGAGTTGCAATTAGGGTATCGGGATCTTTTATTATTGGGAATCAGTTCCTAATATGTGGAGATGGCATTCAAGTAGAGGGCTTGCCAAACTTTAAGGATCTTGGAATTGATATTTCTAGCAAGCGAATGGGTACTTTTCATGAACAGTTCATCATGGAACCGACCAGTCTCATAGGATGCTACCTTATAGCCAAACAAGAGCTGTACATTAACCAGTAG 1557 0.4175 MAGLEELRKKLAPLFDAEKGFSTGSTLDPCDSYTLSDGGTVNLLSRSYGVYNINELGLQKCTSRSVDETDHSEKTYRCASHEMRIFGAIGSGASSIVQRAIHIPTHRIIALKKINIFEKEKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRIHRRIPEPILSSMIQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSFPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDPDARPTAEQLLLHPFITKYENARVDLAGFVQSVFDPTQRMKDLADMLTIHYYLLFDGPDDLWKHTRSLYNEGSTFSFSGEQYVGPNNIVTKLSSIRSTLVGDWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDISSKRMGTFHEQFIMEPTSLIGCYLIAKQELYINQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1819 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Glsi11g1819 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Glsi11g1819 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Glsi11g1819 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Glsi11g1819 518 Gene3D Transferase(Phosphotransferase) domain 1 159 359 - -
Glsi11g1819 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1819 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 29 397 - -
Glsi11g1819 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Glsi11g1819 518 Gene3D Phosphorylase Kinase; domain 1 76 158 - -
Glsi11g1819 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Glsi11g1819 518 Gene3D - 360 517 - -
Glsi11g1819 518 SUPERFAMILY Protein kinase-like (PK-like) 85 369 IPR011009 -
Glsi11g1819 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Glsi11g1819 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1819 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1819 518 CDD PKc_MAPKK_plant_like 84 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1819 Glsi-ChrGlsi11 11347304 11351712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1819 30 518 MAP Kinase Kinase Gene Family AT5G40440 78.732 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Glsi11g1819 Pkinase 6.9e-58 CL0016