Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1808 ATGGCCTCCTTCGTCGGAGCACCATCCTCATATTCTCCTTCCAATCTCCTTTTCAAAACTTCATCATCCTCTCCACCACTCTCTACCTCTACCCACCTCTTCCTTCACTGTCCCGACCTAAAACCCCAAGCCCTATCTTCCAAACAATCAGCTGTCTTGCTCTCCTCTTTTGTCGCCGGTGACTCCCCCATTTTTCATTCCTCGGTTTCATGTTCTCCGGCTCCCGGCGACTCCTCTGGCCGCCGGCCGCTTGTCGTCCGAGCGGCCAGGGGAAAATTTGAGAGGAAGAAACCCCATGTTAATATTGGCACGATCGGTCACGTTGATCATGGGAAGACTACTCTGACGGCTGCTCTTACCATGGCTTTGGCCTCTTTGGGGAATAGCGCCCCCAAGAAGTACGACGAAATCGATGCAGCTCCGGAGGAGAGAGCCCGAGGGATCACGATCAATACTGCAACGGTCGAGTATGAGACTGAGAGCAGACACTATGCTCATGTGGATTGTCCAGGGCACGCTGACTATGTGAAGAATATGATCACGGGTGCGGCGCAAATGGACGGTGCGATTTTGGTAGTTTCAGGTGCCGATGGGCCAATGCCTCAGACGAAAGAGCACATTCTGTTGGCGAAACAAGTGGGTGTGCCCAATATTGTAGTTTTCTTGAACAAGCAGGATCAGGTAGATGATGAGGAGCTTCTTCAACTGGTGGAGTTGGAAGTTCGGGAGCTTTTGACTTTGTATGAATTCCCTGGCGATGATGTGCCTATTGTTTCGGGTTCGGCATTGTTGGCTTTAGAGGCATTGATGGCCAACCCAAAAATCAAGAGAGGAGAGAATGTGTGGGTTGATAAAATTTATGAATTGATGGATGCTGTTGATAGTTATATTCCGATTCCACAGCGACAAACTGATTTACCGTTCCTTATGGCGATTGAAGATGTGTTTTCAATCACTGGTCGTGGTACTGTGGCGACAGGACGGATGGAGAGGGGCACAGTTAAGGTTGGGGACACTGTGGATATAGTGGGTATTAAGGAAACACGTACTACAACAGTTACAGGTGTTGAAATGTTTCAGAAAATACTCGATGAAGCACTTGCCGGTGATAACGTGGGGCTTCTACTTAGGGGCATTCAGAAAACAGACATTCAAAGAGGAATGGTTATAGCCAAACCTGGCACCATCACACCACATACAAAGTTCGTTGCTATTGTGTATGTGTTGAAGAAGGAGGAGGGAGGAAGGCATTCACCATTCTTTGCTGGATACAGACCTCAATTCTACATGAGGACCACTGATGTTACTGGGAAGGTTTCCAAAATAATGAATGATAAGGATGAAGAGTCTAAGATGGTTATGCCAGGAGACCGTGTAAAGATGGCTGTAGAGCTAATTTTTCCAGTAGCGTGTGAACAGGGAATGAGGTTTGCAATTAGAGAAGGTGGAAAGACTGTGGGGGCTGGAGTCATCCAGTCCATCATTGAATGA 1491 0.4789 MASFVGAPSSYSPSNLLFKTSSSSPPLSTSTHLFLHCPDLKPQALSSKQSAVLLSSFVAGDSPIFHSSVSCSPAPGDSSGRRPLVVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLTLYEFPGDDVPIVSGSALLALEALMANPKIKRGENVWVDKIYELMDAVDSYIPIPQRQTDLPFLMAIEDVFSITGRGTVATGRMERGTVKVGDTVDIVGIKETRTTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVIAKPGTITPHTKFVAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVSKIMNDKDEESKMVMPGDRVKMAVELIFPVACEQGMRFAIREGGKTVGAGVIQSIIE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1808 496 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 138 153 IPR031157 -
Glsi11g1808 496 Gene3D Translation factors 303 431 - -
Glsi11g1808 496 CDD EFTU_II 308 394 IPR033720 -
Glsi11g1808 496 CDD EFTU_III 397 491 - -
Glsi11g1808 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 323 IPR027417 -
Glsi11g1808 496 Pfam Elongation factor Tu domain 2 322 390 IPR004161 GO:0005525
Glsi11g1808 496 PRINTS GTP-binding elongation factor signature 101 114 IPR000795 GO:0003924|GO:0005525
Glsi11g1808 496 PRINTS GTP-binding elongation factor signature 181 192 IPR000795 GO:0003924|GO:0005525
Glsi11g1808 496 PRINTS GTP-binding elongation factor signature 165 175 IPR000795 GO:0003924|GO:0005525
Glsi11g1808 496 PRINTS GTP-binding elongation factor signature 145 153 IPR000795 GO:0003924|GO:0005525
Glsi11g1808 496 PRINTS GTP-binding elongation factor signature 218 227 IPR000795 GO:0003924|GO:0005525
Glsi11g1808 496 NCBIfam elongation factor Tu 89 496 IPR004541 GO:0003746|GO:0005525|GO:0006414
Glsi11g1808 496 Gene3D - 89 300 IPR027417 -
Glsi11g1808 496 Hamap Elongation factor Tu [tuf]. 88 496 IPR004541 GO:0003746|GO:0005525|GO:0006414
Glsi11g1808 496 FunFam Elongation factor Tu 435 495 - -
Glsi11g1808 496 Pfam Elongation factor Tu C-terminal domain 395 494 IPR004160 -
Glsi11g1808 496 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 395 495 IPR009001 -
Glsi11g1808 496 Gene3D Translation factors 435 495 - -
Glsi11g1808 496 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 97 301 IPR000795 GO:0003924|GO:0005525
Glsi11g1808 496 NCBIfam small GTP-binding protein domain 100 232 IPR005225 GO:0005525
Glsi11g1808 496 SUPERFAMILY Translation proteins 302 398 IPR009000 -
Glsi11g1808 496 PANTHER ELONGATION FACTOR TU-RELATED 85 495 - -
Glsi11g1808 496 CDD EF_Tu 98 300 IPR041709 -
Glsi11g1808 496 Pfam Elongation factor Tu GTP binding domain 97 298 IPR000795 GO:0003924|GO:0005525
Glsi11g1808 496 FunFam Elongation factor Tu 303 431 - -
Glsi11g1808 496 FunFam Elongation factor Tu 88 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1808 Glsi-ChrGlsi11 11279953 11281443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1808 95 494 Eukaryotic Initiation Factors Gene Family AT5G60390 29.978 1.57e-45 163