Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1789 ATGGCTCATGTTCCAGTCTGTTTTCTTCTCTTTGCTCTCTCTCTTTTGACGCCCAACTTTGTTTCCTCCTCAGCAGTTCAAGACCCTGAGCTAGTTGTACAAGACGTACACAGGAGCATCAACGCGTCCAGAAGAAACCTGGGCTACTTATCATGCGGAACTGGTAACCCCATTGATGATTGCTGGCGCTGTGACCCAAATTGGGAGCAGAACCGGCAAAGGCTAGCTGATTGCGCTATTGGGTTCGGTAAGGACGCCATTGGAGGAAGAAATGGCAGAATCTACATGGTCACTGACTCTGGGGACGATGACCCAGTGAACCCCAGGCCAGGAACTCTAAGACACGCCGTTATACAAGATGAGCCACTGTGGATTATCTTCAAGAGAGATATGGTGATTACTCTAAAGCAAGAGCTTGTGATGAACTCCTTCAAGACAATCGATGGAAGGGGAGCCAGTGTTCACATTGCTGGTGGGGGCTGCATCACCATACATTATGTGAGTAACATCATCATCCATGGCATTCACATCCATGATTGTAAGCCCACGGGGCACGCAAATATCAGGGACTCTCCTCGCCATTCTGGCTGGTGGACGGTTTCGGACGGTGATGGGGTCTCCATCTTTAACTCTAGGCATGTATGGGTGGACCATTGCTCACTATCCAACTGCCATGATGGTCTCATTGATGCCATCCATGGATCCACAGCCATCACCATCTCCAACAACTACATGACCCATCATGACAAGGTCATGCTCTTGGGCCACAGCGACTCTTATACTCAAGACAAGGACATGCAGGCCACTATAGCCTTCAACCATTTTGGAGAAGGCCTTGTACAAAGAATGCCAAGGTGTAGACACGGGTATTTTCATGTGGTGAACAATGACTATACTCACTGGGAGATGTACGCCATTGGTGGGAGTGCTGAACCTACCATTAACAGCCAAGGAAACAGGTTTCTTGCACCGGATATCAGGTTTAGCAAAGAGGTAACCAAGCACGAGGATGCTCCAGAGAATGAATGGATGAACTGGAACTGGAGGTCAGAAGGGGATCTGTTCTTGAATGGAGCATTCTTCAGGCAATCTGGTGCTGGTGCTTCTTCTAGCTATGCTAGGGCATCGAGTCTCAGTGCTAGACCATCATCTTTGGTTGGCTCAATGACCATGACTTCTGGTGTACTCAACTGCAGGAAGGGCACTCGTTGCTAA 1215 0.4889 MAHVPVCFLLFALSLLTPNFVSSSAVQDPELVVQDVHRSINASRRNLGYLSCGTGNPIDDCWRCDPNWEQNRQRLADCAIGFGKDAIGGRNGRIYMVTDSGDDDPVNPRPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGHANIRDSPRHSGWWTVSDGDGVSIFNSRHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQATIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRFLAPDIRFSKEVTKHEDAPENEWMNWNWRSEGDLFLNGAFFRQSGAGASSSYARASSLSARPSSLVGSMTMTSGVLNCRKGTRC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1789 404 Gene3D - 55 397 IPR012334 -
Glsi11g1789 404 PANTHER PECTATE LYASE 18-RELATED 24 402 IPR045032 GO:0030570
Glsi11g1789 404 Pfam Pectate lyase 136 321 IPR002022 -
Glsi11g1789 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Glsi11g1789 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Glsi11g1789 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Glsi11g1789 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Glsi11g1789 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Glsi11g1789 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Glsi11g1789 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Glsi11g1789 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Glsi11g1789 404 SMART amb_all 130 327 IPR002022 -
Glsi11g1789 404 FunFam Pectate lyase 55 397 - -
Glsi11g1789 404 SUPERFAMILY Pectin lyase-like 40 395 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1789 Glsi-ChrGlsi11 11187256 11188672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1789 6 404 Polysaccharide Lyase AT4G24780 79.851 0.0 630