Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1777 ATGGCCCCGTATCTGTGCTTACCATCAAAACAAAGAAGCATCAAAGCTTCAGTCACCTGCTCAAAAGGCTTCACAAGTGGTTGGGTCCCTTGGCAGGCCACTCTTGCTCATGCCTACTTTGAAGCCAACAGATGTGCAGATCGGCTTGCTTATCGGAATCTCAGAATGCCTCCTGGGCAGCATGAATTTATTTCTCCCCCCTCTGGGATCAAGGTTATGATTGATGACTTCGTAAGGGGTGCCATGCTACCCCTTCCAATGGCTTATTCCTCTTCTTCCTCTACCGCTCTACTTGTGCTCCTCTTGACCAGTCTCTGGTGCTGTGTCTGTTCGTTTGAGTTCCAAGTGGGTGGCTCTGAAGGGTGGGCTGTCCCAACTCCCAATGACACCAACATCTACAATGACTGGGCTTCACACAACAGGTTCCAAGTTGGTGACTCTATCCGGTTTAAGTACAAGAAGGACTCGGTGATGGAGGTGAGTGAGGAAGGTTACAAGAACTGCAATTCAAGTCACCCCAACATGTTCTCCAACAATGGCAACACCGTGTTCAGGTTCGACCATCCTGGCTCTTTCTACTTCATCAGCGGTGCATCTGGACACTGCCTTAAGGGACAGAAGATGATTGTAAGGGTGCTCACTCAGGAGGACTCTCTTGCAGATCATGCCAAGTCTTCTGCCTTCCGTCTTGCAGTTTCACCACTTCAACTCTCTAACGTGCTCTTTCACTTTGTTTTCGTATTTGCTGTTTCTTATTTTTCTAAATTCACCGGAAAACTGGCGCTTTATAATGAAGATCCTTCGTCTTCATGCGTAGCCCTTTTGGTCATCTGTTCTCATCCAAGCTGTCATTTTCCTTCTTTCCCTTCTCTATTGCAGGAAAAAATGGCGACAGGGTTGTTCAGAAGGGCGGTTTCTAGGGCTTCATCATCGCCGGCATCGAAGCTTCTGAGGGTCCGAGCCCACGCTTCTGAAGCTCAAGCCCAGCAGGTGGAGCCAACCGCTCGGGATTCCACCAGCTTCAAGACCTTCCAAATCTACCGATGGAGCCCGGAGAATCCATCGAAGCCTCAGCTTCAGGAGTACAAGATCAATCTCAAGGAGTGTGGGCCCATGGTACTTGACGCCTTGATCAAAATTAAGAACGAGACGGACCCCTCGCTCACTTTCCGCAGGTCGTGCCGAGAGGGAATCTGTGGGTCCTGTGCCATGAACATTGATGGATGTAATGGGTTAGCTTGCTTGACGAAGATTCCTACCGGGTCCGCATCCACAATTACTCCTTTACCTCATATGTTCGTGATCAAGGATCTGGTGGTGGATATGACGAATTTCTACAATCAGTACAAGAGTATTGAACCGTGGTTGAAGAGGAAGAACTCACCCCCAGTTCCTGGGAAGGAAATACCGCAGAGCAAGAAGGACAGGGCTAAGCTCGATGGGATGTACGAGTGCATATTATGCGCATGCTGTAGCACATCCTGCCCCAGTTACTGGTGGAACCCCGAGTCTTATCTGGGTCCCGCCGCTTTGCTCCACGCTAATAGGTGGATAAGCGACAGTCGTGATGAGTACACTGAGGAGCGATTGGAGGCCATTAACGATGAATTTAAGCTCTACCGCTGCCACACGATATTGAACTGTGCTCGTGCCTGTCCAAAGGGCTTGAACCCTGGAAAGCAAATCTCACATATCAAACAGCTTCAGCTGGGAATTACCGGTGCTTGA 1728 0.4954 MAPYLCLPSKQRSIKASVTCSKGFTSGWVPWQATLAHAYFEANRCADRLAYRNLRMPPGQHEFISPPSGIKVMIDDFVRGAMLPLPMAYSSSSSTALLVLLLTSLWCCVCSFEFQVGGSEGWAVPTPNDTNIYNDWASHNRFQVGDSIRFKYKKDSVMEVSEEGYKNCNSSHPNMFSNNGNTVFRFDHPGSFYFISGASGHCLKGQKMIVRVLTQEDSLADHAKSSAFRLAVSPLQLSNVLFHFVFVFAVSYFSKFTGKLALYNEDPSSSCVALLVICSHPSCHFPSFPSLLQEKMATGLFRRAVSRASSSPASKLLRVRAHASEAQAQQVEPTARDSTSFKTFQIYRWSPENPSKPQLQEYKINLKECGPMVLDALIKIKNETDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIPTGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNSPPVPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTEERLEAINDEFKLYRCHTILNCARACPKGLNPGKQISHIKQLQLGITGA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1777 575 CDD fer2 373 407 IPR001041 GO:0051536
Glsi11g1777 575 SUPERFAMILY alpha-helical ferredoxin 442 568 - -
Glsi11g1777 575 NCBIfam succinate dehydrogenase and fumarate reductase iron-sulfur protein 346 566 IPR004489 GO:0006099|GO:0016491
Glsi11g1777 575 FunFam Succinate dehydrogenase iron-sulfur subunit SdhB 442 573 - -
Glsi11g1777 575 SUPERFAMILY Cupredoxins 111 213 IPR008972 -
Glsi11g1777 575 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 394 402 IPR006058 GO:0051537
Glsi11g1777 575 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 485 496 IPR017900 -
Glsi11g1777 575 Pfam Plastocyanin-like domain 131 206 IPR003245 GO:0009055
Glsi11g1777 575 SUPERFAMILY 2Fe-2S ferredoxin-like 341 441 IPR036010 GO:0051536
Glsi11g1777 575 FunFam Early nodulin-like protein 1 111 217 - -
Glsi11g1777 575 Gene3D - 332 441 IPR012675 -
Glsi11g1777 575 PANTHER SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN 332 569 - -
Glsi11g1777 575 Pfam 2Fe-2S iron-sulfur cluster binding domain 343 446 IPR025192 GO:0009055|GO:0051536
Glsi11g1777 575 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 355 432 IPR001041 GO:0051536
Glsi11g1777 575 Pfam 4Fe-4S dicluster domain 484 557 - -
Glsi11g1777 575 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 475 505 IPR017896 -
Glsi11g1777 575 CDD OsENODL1_like 112 213 IPR041846 -
Glsi11g1777 575 Gene3D - 442 573 IPR009051 GO:0051536
Glsi11g1777 575 Gene3D - 111 218 IPR008972 -
Glsi11g1777 575 ProSiteProfiles Phytocyanin domain profile. 112 214 IPR003245 GO:0009055
Glsi11g1777 575 FunFam Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial 332 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1777 Glsi-ChrGlsi11 11116380 11120210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1777 92 213 Phytocyanin Superfamily AT3G18590 55.200 7.04e-44 152