Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1771 ATGTGGTTGGGGATTTCTTACTTTGTTGTATCACTATTCGGGATATTTTGTAACATTCTGTTGGCAATTTTGCCTAAATCTGAGGAAAGTAAAGTGTCTTTACAGCCAGGCATTGGCCCTCAACTATTTCTGCATCGCAGAGCCTACATTGAATATTCCAATGCTTCAACCAACTTTCTTTCCTCTACTTGTGCTATAGGGGCATCGAAAGGTCGTCTATGGTCCCTTGATGAAGATCACAAGCTTGTGAGCTTCATCATCCAAAACGGCATCCGGTGCTGGAAAACGGTTCCCCAGCTTGCAGGTGTTTCTGATGAAGGTCTGCAGGGGAGATGTGGAAAGAGCTGCAGATTGAGATGGTGGTCTAAGATTGCTGCATATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGCACACTCGAATCACAAAAAAGTTGAAGAAAATTCACGAAAATAAGACAAACCCAGTGCAAGAGAAAAAACAGAAACCGGAGATTGTGTCCTTGGATAGTGATGGCATGGAAGAAATGTCAAAGCCAGAAGAAAAAAGAGAAGACAACAAGGCGACGAGTTGGGATGAGTATGAACCTGTACTTATAGACAATGCCCGTATGCTATGCGTATACCTGGACGAGAACCAATTCTTCGTGAGCCAACAAACCAAGACCAGTACGGTTGAGGACAACACCATGCAGCAAGTGGTTGATAGTAGGGATGATATTGAGGAAAACACCTTGCACTTGCAGCAACGTGTTGATAATATGGAATCCAAAACTGTCTCGTGGGACAGCTTAAGTGCTCTTGAACAACAACTTTTCATCTTGGAAAATAGTGACCCTACTATTACTATGGATGTTTTGTGA 870 0.4287 MWLGISYFVVSLFGIFCNILLAILPKSEESKVSLQPGIGPQLFLHRRAYIEYSNASTNFLSSTCAIGASKGRLWSLDEDHKLVSFIIQNGIRCWKTVPQLAGVSDEGLQGRCGKSCRLRWWSKIAAYFPGRTDNEIKNHWHTRITKKLKKIHENKTNPVQEKKQKPEIVSLDSDGMEEMSKPEEKREDNKATSWDEYEPVLIDNARMLCVYLDENQFFVSQQTKTSTVEDNTMQQVVDSRDDIEENTLHLQQRVDNMESKTVSWDSLSALEQQLFILENSDPTITMDVL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1771 289 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Glsi11g1771 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 148 IPR017930 -
Glsi11g1771 289 PANTHER MYB DOMAIN PROTEIN 55 70 120 - -
Glsi11g1771 289 MobiDBLite consensus disorder prediction 153 192 - -
Glsi11g1771 289 Coils Coil 240 260 - -
Glsi11g1771 289 Gene3D - 121 170 - -
Glsi11g1771 289 Gene3D - 73 120 - -
Glsi11g1771 289 SUPERFAMILY Homeodomain-like 73 143 IPR009057 -
Glsi11g1771 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Glsi11g1771 289 SMART sant 70 146 IPR001005 -
Glsi11g1771 289 Pfam Myb-like DNA-binding domain 74 120 IPR001005 -
Glsi11g1771 289 Pfam Myb-like DNA-binding domain 121 142 IPR001005 -
Glsi11g1771 289 CDD SANT 74 142 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1771 Glsi-ChrGlsi11 11090134 11094726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1771 66 151 MYB Transcription Factor Family AT1G66230 43.590 1.93e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g1771 Myb_DNA-binding 6.7e-08 CL0123