Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1744 ATGTCTGCCACGTGCACCCTAAAACCCGTCCATGATAAAGTCCAAAACGCAATATATGGTGGGGTAGCTCGATTTGTACCAATCCACAACAAACTTCAGAGATTTCGACGTCCTTTTTGTGTTTGTTCAATGGGAGAGGATTCTGGTCACCTGGAAGAAACAATAATGAATAACAACATCGAAGGGGAAGGGGAAGTTGAAGAAGAAGAAAGAGACCCAGAAAGCAATCCATTGAATCAGCCATTGCTAAAGAGGAATCGGACTCTGTCTTCCAATCCACTCGCTCTGGTTGGAGCAAAAGTTTCCTACATAGAGAGCTTGGACTATGAGATAAACGAGAATGATCTATTCAAGCATGATTGGAGGAGCAGATCAAGAGTTCAAGTATTGCAGTACATATTCTTGAAATGGACGCTGGCTTTCCTGGTTGGACTTCTTACTGGTATTACAGCCACTCTCATCAATCTTGCTATTGAGAACATTGCGGGGTACAAGTTTCTGGCTGTTGTTAAATACATCGACAAAGAAAGGTACCTAGCGGGGTTCCTATATTTCACGGGCATTAATTTCCTTTTAACATTGGTTGCCTCTCTACTCTGTGTGTGTTTTGCGCCCACAGCAGCTGGACCTGGTATACCTGAAATCAAAGCTTATCTTAATGGCGTCGATACTCCCAACATGTACGGTGCTACCACATTGATTGTCAAGATAATTGGAAGTATTGGGGCTGTCTCTGCTGGCCTAGATTTAGGAAAAGAAGGTCCCTTGGTACATATTGGCAGCTGCTATGCTTCCTTACTAGGCCAAGGAGGCCCTGACAAATACCGAATCAAATGGCGCTGGCTGCGATATTTCAACAACGATCGTGACCGTCGTGATCTTATTACTTGTGGTGCTTCTTCGGGGGTTTGTGCAGCTTTCCGAGCCCCCGTTGGTGGAGTTCTCTTCTCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTCTGGAGAACCTTCTTCAGCACAGCTGTGGTAGTGGTAGTGCTCAGGGCTTTCATTGAAATTTGCAACTCTGGGAAATGTGGCCTTTTTGGCGCAGGAGGACTGATAATGTTTGATGTGAGCAATGTCACCGTGAACTACCGTGTGATGGATATCTTCCCTGTTGCAACCATTGGCATCATTGGCGGGCTATTGGGAAGCCTCTATAACCATCTTCTCCACAAGGTCCTCAGACTCTACAATCTCATCAATCAGAAGGGAAAAATTCATAAGCTCCTCCTCAGTCTTGTAGTTGCACTCTTTACATCAGTGTGCCAATATTGTCTTCCATTCCTAGCAAAATGCACCCCCTGCAGTTCGTCACTTCCAGAGTCTGTCTGCCCCAACAATGGACGGTCTGGGAATTTCAAACAGTTCAACTGCCCCAGTGGCTACTACAACGATCTTGCCACTCTGCTGCTTACCACTAATGATGATGCTGTACGAAACATATTCTCAACCAACACTCCTCACGAATACCATCCATCTTCCCTCCTAATCTTCTTTGCACTCTATTGCATATTAGGATTGATAACTTTTGGCATTGCTGTGCCATCTGGGCTCTTCCTCCCAATCATCCTCATTGGCTCAGGTTATGGCCGCCTTCTTGGCCTCTTAATGGGACCTCATACAAATATTGACCACGGGTTGTTTGCTGTTCTTGGTGCAGCCTCCCTCATGGCTGGTTCAATGAGAATGACTGTATCTCTTTGTGTGATCTTTCTTGAACTCACCAACAACCTTCTGCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGGGACTGTTTCAACCCAAGCATCTATGAGATTATACTGCACTTAAAAGGCCTTCCTTTCTTGGATGCAAAGCCTGAGCCATGGATGAGAAATCTCACAGTAGGTGATCTTGTCGATGTAAAGCCGGCGGTGGTTACCCTCAATGGAGTAGAGAAGGTGGCCCATATAGTAGATGTCTTGAAAAACACTACACACAATGCTTTCCCTGTCGTGGATGATGGAGTAGTACCCCCAACAGGACTGGTCAATGGGGCAAAAGAACTGCATGGACTGATCCTAAGAGCTCATCTTGTCCAAGCACTAAAGAAGAAATGGTTCTTCAAAGAGAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAAAAATTTACCTGGGTTGAGCTGGCTGACAGAGAAGGGAATATCGAAGAGGTGGCTGTGACAAGTGAGGAAATGGAGATGTTTGTTGATATACATCCTCTGACCAATACAACTCCCTTTACAGTTCTAGAGAGCATGTCGGTGGCAAAAGCGATGGTCCTCTTCAGGGAAGTAGGACTTCGCCATCTACTTGTTGTACCCAAGTATCAAGCATCTGGGGTGTCTCCTGTAATTGGGATCTTGACCAGGCAGGATCTACTAGCCTACAACATTCTGACAGTCTTTCCTAATCTGGCGAAATCCAAGGGCCGAGAAAAGAGGCACTAA 2502 0.456 MSATCTLKPVHDKVQNAIYGGVARFVPIHNKLQRFRRPFCVCSMGEDSGHLEETIMNNNIEGEGEVEEEERDPESNPLNQPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWTLAFLVGLLTGITATLINLAIENIAGYKFLAVVKYIDKERYLAGFLYFTGINFLLTLVASLLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCYASLLGQGGPDKYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGAGGLIMFDVSNVTVNYRVMDIFPVATIGIIGGLLGSLYNHLLHKVLRLYNLINQKGKIHKLLLSLVVALFTSVCQYCLPFLAKCTPCSSSLPESVCPNNGRSGNFKQFNCPSGYYNDLATLLLTTNDDAVRNIFSTNTPHEYHPSSLLIFFALYCILGLITFGIAVPSGLFLPIILIGSGYGRLLGLLMGPHTNIDHGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFLDAKPEPWMRNLTVGDLVDVKPAVVTLNGVEKVAHIVDVLKNTTHNAFPVVDDGVVPPTGLVNGAKELHGLILRAHLVQALKKKWFFKERRRTEEWEVREKFTWVELADREGNIEEVAVTSEEMEMFVDIHPLTNTTPFTVLESMSVAKAMVLFREVGLRHLLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPNLAKSKGREKRH 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1744 833 SUPERFAMILY Clc chloride channel 114 630 IPR014743 -
Glsi11g1744 833 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 69 817 - -
Glsi11g1744 833 SMART cbs_1 763 816 IPR000644 -
Glsi11g1744 833 SMART cbs_1 649 708 IPR000644 -
Glsi11g1744 833 PRINTS Plant CLC chloride channel signature 478 494 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g1744 833 PRINTS Plant CLC chloride channel signature 110 118 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g1744 833 PRINTS Plant CLC chloride channel signature 321 329 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g1744 833 PRINTS Plant CLC chloride channel signature 335 345 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g1744 833 PRINTS Plant CLC chloride channel signature 353 360 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g1744 833 ProSiteProfiles CBS domain profile. 760 826 IPR000644 -
Glsi11g1744 833 PRINTS Chloride channel signature 558 574 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g1744 833 PRINTS Chloride channel signature 576 595 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g1744 833 PRINTS Chloride channel signature 205 222 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g1744 833 PRINTS Chloride channel signature 300 319 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g1744 833 PRINTS Chloride channel signature 614 628 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g1744 833 PRINTS Chloride channel signature 526 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g1744 833 PRINTS Chloride channel signature 236 255 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g1744 833 SUPERFAMILY CBS-domain pair 632 814 IPR046342 -
Glsi11g1744 833 Gene3D Clc chloride channel 127 629 - -
Glsi11g1744 833 MobiDBLite consensus disorder prediction 63 82 - -
Glsi11g1744 833 CDD ClC_6_like 105 627 - -
Glsi11g1744 833 FunFam Chloride channel ClC3 128 445 - -
Glsi11g1744 833 Pfam Voltage gated chloride channel 193 607 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g1744 833 CDD CBS_pair_voltage-gated_CLC_euk_bac 647 814 - -
Glsi11g1744 833 Pfam CBS domain 762 814 IPR000644 -
Glsi11g1744 833 Gene3D - 632 819 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1744 Glsi-ChrGlsi11 10886452 10891357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1744 58 828 Ion Channels AT3G27170 79.507 0.0 1248