Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1741 ATGCCAATTGACGAGAGAGAGGGAAGCAGTGGCCGTGAGTTAAAAGCCCCAGAACAGCTTCAGCCTTCCGGGAGGACGATGGTGCTGGTGCCTAGGGTTAGGGAATGGTCGAATTGGAAATCAAAGTTGAGGCATCAAACTCACTGCGGAGCTGCGAAAATGGTGAAATACTCAAGAGAGCCTGATAACCCCACAAAGTCGTGCAAAGCCCGGGGTTCAGATCTCAGAGTTCATTTTAAGAACACAAGGGAGACAGCCCATGCAATTAGGAAGTTGCCCTTGGCAAAGGCTAAAAGGTATCTGGAAGATGTTATTGCCCACAAACAAGCAATTCCCTTTCGACGGTTTTGTCGTGGAGTTGGTCGCACTGCCCAAGCAAAAAACCGTCATTCAAATGGTCAAGGACGCTGGCCTGTCAAATCAGCTAATTTTATCCTTGACTTGCTGAAAAATGCTGAGAGTAATGCAGAAGTGAAAGGTCTTGATGTAGATGCATTGTATATTTCCCACGTCCAGGTAAATCAAGCTCAGAAGCAGAGGCGCCGTACCTACCGTGCTCATGGGAGAATTAACCCATACATGTCTTCACCTTGCCACATCGAGTTGATTTTGTCTGAAAAGGAGGAGCCGGTCAAGAAGGAGCCTGAGACACAGCTGGCTTCCAGGACCTCCAAGAGCTCGTAG 684 0.4839 MPIDEREGSSGRELKAPEQLQPSGRTMVLVPRVREWSNWKSKLRHQTHCGAAKMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVIAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSANFILDLLKNAESNAEVKGLDVDALYISHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLASRTSKSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1741 227 PANTHER 60S RIBOSOMAL PROTEIN L17 54 224 IPR005721 GO:0003735|GO:0006412|GO:0015934
Glsi11g1741 227 Pfam Ribosomal protein L22p/L17e 70 205 IPR001063 GO:0003735|GO:0005840|GO:0006412
Glsi11g1741 227 Gene3D Ribosomal protein L22/L17 54 227 IPR036394 GO:0003735|GO:0005840|GO:0006412
Glsi11g1741 227 MobiDBLite consensus disorder prediction 206 227 - -
Glsi11g1741 227 FunFam 60S ribosomal protein L17 54 227 - -
Glsi11g1741 227 ProSitePatterns Ribosomal protein L22 signature. 180 204 IPR018260 GO:0003735|GO:0005840|GO:0006412
Glsi11g1741 227 CDD Ribosomal_L22 68 204 IPR001063 GO:0003735|GO:0005840|GO:0006412
Glsi11g1741 227 NCBIfam 50S ribosomal protein L22 57 207 IPR005721 GO:0003735|GO:0006412|GO:0015934
Glsi11g1741 227 SUPERFAMILY Ribosomal protein L22 54 207 IPR036394 GO:0003735|GO:0005840|GO:0006412
Glsi11g1741 227 Hamap 50S ribosomal protein L22 [rplV]. 53 207 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1741 Glsi-ChrGlsi11 10873615 10876613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1741 54 227 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.655 1.12e-118 333