Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1721 ATGGAGCGGAAGTGGAAACAGCTTGCGGGGGATTCAACTGGTTCGGCCCTATCAACACAGAAAAATGGAGGAGGATCTGTGGATTTGAGGGTGGGTGAGAGTTCTAAAAGTATCCGCGTGAATTATAGATCGAAGAAGAAGAGCAAGTGTTTGGTGGATGGGTGCAGTAATGACATGAGCATTTGTAGACCGTATTACAAGCGGCACCATGTGTGCGTAGAGCATTCCAAACAACCTGCTGTGTGGGTAAATGGCATTTGTCAACGATTCTGCCAACAGTGCAGCAGATTTCAATCGTTGGAAGAATTCGATAATTTGAAGAAAAGCTGTCAAAGACGTCTGGAGGGGCACAATAGACGCAGAAGAAAACCTCGCCCAACAGATCAATCCCTACATCTTCATAGATATCTCAAAGATTACCTAAGTTTGTGTCGCATCTCAACATTCAATTCTCTGAATTTTGGTTTATGACCCAATCTGCTTCAATCGGGCAGTCCTGCTGTGACATTCGTGAGCCCTCTTGCGAGTGGCACAAATGGAGGGGAGCTCACGAGGCCTTACGCAGGCTATGGCAAGGAGGCAGTGCCTCAGCCATTTTATGGTGCGACTGCCTCATCATCATCAAGGGGAGGAAGGGGAAGCCACATGTTCTCATACGATGAATCAAGGGCTCTCAATCTTCTGCCATCATTTCAACCACAGATCTCCCAGTGTAGAATGGTGCAGTCACAGTCCAGCTCCAGCATGACCACACCAATTCCAGCACAACCTCAACCTCATCCTCCATTACCATTACGTGCAGATGTCCAATTTGATAAGGCTAGCGGTTCAATATTGGGTTTAGAAGATGCAAACACAAGCAGCCTTCCTTGCAATGGGATGACGGAGAATGGTTAA 897 0.4705 MERKWKQLAGDSTGSALSTQKNGGGSVDLRVGESSKSIRVNYRSKKKSKCLVDGCSNDMSICRPYYKRHHVCVEHSKQPAVWVNGICQRFCQQCSRFQSLEEFDNLKKSCQRRLEGHNRRRRKPRPTDQSLHLHRYLKDYLSLCRISTFNSLNFGLXPNLLQSGSPAVTFVSPLASGTNGGELTRPYAGYGKEAVPQPFYGATASSSSRGGRGSHMFSYDESRALNLLPSFQPQISQCRMVQSQSSSSMTTPIPAQPQPHPPLPLRADVQFDKASGSILGLEDANTSSLPCNGMTENG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1721 298 SUPERFAMILY SBT domain 49 127 IPR036893 GO:0003677|GO:0005634
Glsi11g1721 298 MobiDBLite consensus disorder prediction 11 25 - -
Glsi11g1721 298 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Glsi11g1721 298 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
Glsi11g1721 298 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 264 IPR044817 GO:0003677
Glsi11g1721 298 Coils Coil 100 120 - -
Glsi11g1721 298 MobiDBLite consensus disorder prediction 280 298 - -
Glsi11g1721 298 MobiDBLite consensus disorder prediction 242 298 - -
Glsi11g1721 298 Pfam SBP domain 50 123 IPR004333 GO:0003677
Glsi11g1721 298 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1721 Glsi-ChrGlsi11 10777910 10779274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1721 50 126 SBP-box Gene Family AT5G50670 68.831 1.07e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi11g1721 SBP 1.1e-26 No_clan