Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1711 ATGGATTATGTTGACGAGAAAAGATGTGGTTATCAGGAAGTGAAACTTGGTTCAGAGGGTTTTTCGTTCGTGGGTTGTTCTGCATCGCCAGCAGCAGCGGGATCAGCAGCTATGGCTCCCAAAAGAGGTGGAAAAGCTCCAGTTGCAGCTGCTAAGAAGAAGCAGGAGAAGGTGGTGAATCCACTATTTGAGAAGCGTCCGAAACAGTTCGGGATTGGAGGGGCATTGCCTCCTAAGAGAGACCTGACGCGATTCGTGAAGTGGCCCAAGACTGTTCAAATCCAGAGAAAGAAGAGGATCCTCAAGCAAAGGTTGAAGGTCCCACCAGCTTTGAACCAATTCACCAAAACGCTTGACAAGAACCTTGCAACAAACCTGTTTAAGATGCTCCTTAAGTATAGGCCTGAGGATAAAGCTGAAAAGAAAGAGCGTCTTTTGAAAAGGGCTCAGGCAGAGGCAGAAGGCAAAACTGTTGAATCAAAGAAGCCTATTGTTGTGAAATATGGTCTCAATCACGTCACCGACCTTATTGAGCAGAATAAAGCACAGTTGGTTGTGATTGCCCATGATGTAGATCCAATTGAACTGGTTGTCTGGCTCCCAGCATTGTGCAGGAAGATGGAAATTCCCTACTGCATTGTCAAGGGGAAGGCACGCTTGGGATCGATTGTCCATAAGAAAACTGCATCAGTTTTGTGCCTGACCACTGTCAAGAATGAAGACAAATTAGAATTCTCTAAAATTCTAGAGGCTATCAAGGCCAACTTCAATGACAAGTATGATGAATACCGGAAGAAGTGGGGTGGTGGGATTATGGGTTCCAAATCCCAAGCCAAAACCAAGGCCAAGGAAAGGCTTCTTGCCAAAGAAGCAGCGCAAAGGATGTCCTAA 891 0.459 MDYVDEKRCGYQEVKLGSEGFSFVGCSASPAAAGSAAMAPKRGGKAPVAAAKKKQEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEAEGKTVESKKPIVVKYGLNHVTDLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1711 296 FunFam 60S ribosomal protein L7a 88 271 - -
Glsi11g1711 296 Coils Coil 139 159 - -
Glsi11g1711 296 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 80 279 - -
Glsi11g1711 296 PRINTS Ribosomal protein L7A/RS6 family signature 211 225 IPR018492 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A/RS6 family signature 166 180 IPR018492 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A/RS6 family signature 185 198 IPR018492 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A/RS6 family signature 201 211 IPR018492 -
Glsi11g1711 296 ProSitePatterns Ribosomal protein L7Ae signature. 204 221 IPR004037 GO:0042254|GO:1990904
Glsi11g1711 296 SUPERFAMILY L30e-like 128 261 IPR029064 -
Glsi11g1711 296 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 153 243 IPR004038 -
Glsi11g1711 296 Gene3D - 88 271 IPR029064 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A family signature 255 275 IPR001921 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A family signature 67 84 IPR001921 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A family signature 84 101 IPR001921 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A family signature 104 123 IPR001921 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A family signature 128 141 IPR001921 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A family signature 162 182 IPR001921 -
Glsi11g1711 296 PRINTS Ribosomal protein L7A family signature 223 247 IPR001921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1711 Glsi-ChrGlsi11 10686125 10689780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1711 38 296 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.328 2.08e-165 457