Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1699 ATGACATTCTTAGAGATGGAGAAACTCCAAAGCTTTGTTGTCGGCGGGGGCATAAAATTGCCTATTGGGTACAGATTCTGTCCCACCGATGAAGAGCTTGTCATTCATTACCTGAGGAGGAAGGCCTTTGCTCAAACATTGCCCGCATCTGTCATTCCTGAGTTTGATGTATTTCAGACCCACCCTTCGGGGCTCCCAGGTGTAGAAGTAGGTGATTCCAAAGAAAAGGGGTATTTTTTCAGCATCCGGAAGGATCATGTCTATGAAAACATTGGCAAGAGAGCTGCTGCCGGTGGGTACTGGAAATCCACAGGCAAAGATAAACAAATTGTAACTTCTCAGAGCGACCAAGTGGTTGGGATGAGGAAAACACTGGTTTTTTGTGAAGGGAAACGTTCCCGTGAGACCAAAACTCGATGGGTCATGCATGAACTACGTATGGTGAGCTCTGCAACAGCTTCTCACCCATTTCAGATGCCATCGGTAGATTGGGCTGTGTATCGCATATTTCAGAAGAAGAGAAAGCTCAAGAGAAAAGCGTCCAGCGAGCAGCTCTCTAACAGCAGGAAAGTTCAGAGGTTCGAGGAGATTAAACCCAGTTTAATAGATTTCACTGTGGACTATAATTTTGATGCAGGTCCTCCTCCACCTTGTTCACCATGTTCCAGTGAAGGCAGTGACATTGTTTCTAACAAGTTAGACTAG 705 0.4567 MTFLEMEKLQSFVVGGGIKLPIGYRFCPTDEELVIHYLRRKAFAQTLPASVIPEFDVFQTHPSGLPGVEVGDSKEKGYFFSIRKDHVYENIGKRAAAGGYWKSTGKDKQIVTSQSDQVVGMRKTLVFCEGKRSRETKTRWVMHELRMVSSATASHPFQMPSVDWAVYRIFQKKRKLKRKASSEQLSNSRKVQRFEEIKPSLIDFTVDYNFDAGPPPPCSPCSSEGSDIVSNKLD 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1699 234 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
Glsi11g1699 234 Gene3D NAC domain 29 178 IPR036093 GO:0003677|GO:0006355
Glsi11g1699 234 PANTHER NAC TRANSCRIPTION FACTOR 56 20 186 - -
Glsi11g1699 234 ProSiteProfiles NAC domain profile. 20 172 IPR003441 GO:0003677|GO:0006355
Glsi11g1699 234 MobiDBLite consensus disorder prediction 215 234 - -
Glsi11g1699 234 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1699 Glsi-ChrGlsi11 10618956 10620014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1699 12 174 NAC Transcription Factor Family AT5G13180 47.561 1.05e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi11g1699 NAM 1.1e-28 No_clan