Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1693 ATGGCAGACCCAGTCACTCACCATTTCTCCAACCACCCTTCTGCTTCTAAAACTGCAAAGAAATCCCAACACCATTCCCCTTCTTCCTTTCCTACCCCATTCTCCTGTCCATACTGTGACAGGAAGTTCTTCAATTGCCAAGCTCTCGGGGGCCACCAGAATGCCCACAGGCTCGAGAGAACAGTGGCAAAGAAAAACTATCTTGCCCAACATCGTAGGTTGCAGTCGCCCGTGATGAAACCAGAACCTCTTCATTTCTATTGCCGGGAACCCATGAAGGTCTTTCACTTTCAAGTTCCAACAAATGTTCCTATTGCCTTTCATGGCGCCTCTACCTCCCAAGTTTTCTCCCCTCCGGGATCTGATGCTGTTGAGGACGCACCGCTTGATCTCGAACTCCACTTATGA 408 0.4951 MADPVTHHFSNHPSASKTAKKSQHHSPSSFPTPFSCPYCDRKFFNCQALGGHQNAHRLERTVAKKNYLAQHRRLQSPVMKPEPLHFYCREPMKVFHFQVPTNVPIAFHGASTSQVFSPPGSDAVEDAPLDLELHL 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1693 135 MobiDBLite consensus disorder prediction 1 26 - -
Glsi11g1693 135 SUPERFAMILY beta-beta-alpha zinc fingers 32 62 IPR036236 -
Glsi11g1693 135 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Glsi11g1693 135 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Glsi11g1693 135 MobiDBLite consensus disorder prediction 9 26 - -
Glsi11g1693 135 Gene3D Classic Zinc Finger 10 83 - -
Glsi11g1693 135 PANTHER ZINC FINGER PROTEIN JAGGED 11 86 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1693 Glsi-ChrGlsi11 10592692 10593099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1693 31 66 C2H2 Transcription Factor Family AT5G57520 72.222 1.51e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g1693 None None None