Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1678 ATGATGATGGATCAGCGAGAGAAGCTGCTTCGCAAAACCGAGGCCTGTGCTTTGGTGGCAGGTGTTGAGGCTGAGCTTGTCACCGTGGCAGGGGACAACAACATAAATCGTGGGTCGGGTCGGATCCATGACCCTGGCCTTGTGGCTGCCGTTACCACTTTCGGCACTGTTCATAGGAAGAAAAGGATGGCCAGGCAGAGGAGGTCCTCCATCATCAACCTCCACCCACCTCCACCTCCTGCTCCTTCTACCTCCTCGCACGTGCCTCTCTCCCCGCTTCGACCTTATAATCCTTCTCCTCCACTCCTACCCGCACGTGAAATCGATCATAGGAGGTTGAGATTCCTTTTTCAAAAGGAGCTCAAGAACAGTGATGTAAGCTCCCTAAGGAGAATGGTGCTCCCAAAGAAAGCAGCCGAGGCTTTCCTCCCTGCCCTTGAGTCAAAGGAAGGAATTCTTATCAGCATGGATGATATGGATGGTCTTCATGTATGGAGCTTCAAGTACAGGTTTTGGCCAAATAACAACAGTCGTATGTATGTACTTGAAAATACGGGGGAATTTGTTAGCACACATGGCTTACGTCTTGGAGATTCCATTGCCGTTTACCAAGATAATCAAAATCTTAATTATGTCATTCAAGCCAAAAAGGCTTCGGACCAAGATGATTTTATGGGCGTAGCCAGCGATACCATCAGCGATCTCTTTCTACACGATTACGAGGTTAACAAATCCAACAGCCTCACCGTGAGCTTTCCCACGATGAATGACACAGACATGTCGTTCATCTATGAAACTACCTTCTCAAATGACTCCCCACTTGATTTTTTGGGTGGATCAATGACCAGTTTTTCAAGGATTGGACCAGTTGAAACCTTTGGCTCTGTCGACAATTTGTCACTCGATGAATTCTATTAA 918 0.4739 MMMDQREKLLRKTEACALVAGVEAELVTVAGDNNINRGSGRIHDPGLVAAVTTFGTVHRKKRMARQRRSSIINLHPPPPPAPSTSSHVPLSPLRPYNPSPPLLPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALESKEGILISMDDMDGLHVWSFKYRFWPNNNSRMYVLENTGEFVSTHGLRLGDSIAVYQDNQNLNYVIQAKKASDQDDFMGVASDTISDLFLHDYEVNKSNSLTVSFPTMNDTDMSFIYETTFSNDSPLDFLGGSMTSFSRIGPVETFGSVDNLSLDEFY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1678 305 Pfam B3 DNA binding domain 117 215 IPR003340 GO:0003677
Glsi11g1678 305 CDD B3_DNA 115 217 IPR003340 GO:0003677
Glsi11g1678 305 SUPERFAMILY DNA-binding pseudobarrel domain 115 213 IPR015300 -
Glsi11g1678 305 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Glsi11g1678 305 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 58 223 IPR044800 GO:0003700
Glsi11g1678 305 MobiDBLite consensus disorder prediction 62 92 - -
Glsi11g1678 305 Gene3D - 113 229 IPR015300 -
Glsi11g1678 305 SMART B3_2 117 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1678 Glsi-ChrGlsi11 10519388 10522023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1678 1 305 B3 DNA Binding Superfamily AT3G26790 48.521 1.75e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi11g1678 B3 2.6e-15 CL0405