Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1677 ATGGCGACCAGTTACTGGGCAGTCTCTCTTCCTGTTCAAAATGCTGCATCTGCTATATGGAATCAATTACGAGAACGAATCTCCAAGCATTCCTTTGATACTCCTCTGTACAGAGTGCTCTTTCCTCCTCCTTTTCCTTGCGATTTCATAGAAGGAGTGTCACTGAAGATCTGGCGACAGATCGAGGAATTGGAGAGAGTGTCAGGCGTAGAAAGCAGCGGGCTGACAGTAGATGAAGTGCCTGTTGATTCATACTTGACCAGTTTAGTCTTTCTAATGGAAGGTTTGTTTGGGATGAAGCAAAGTACCCGACTTCCCATGTCACCTTTGAAGGAGATAGTAGATCATATTCATGGTCAAGTGGCAAAAATTGAGGATGTTCTCAAGTTAACTTTTTTAGAAGGCCTTTCTTTCTGCAAAACGAAGAAAAGATTAGCTGTCCGTGATCTTTCCAACTTGGTAAAACCAGAGGATATTATAACTTCAGAACATTTAACTACTCTCCTTGCAATTGTTTCCAAGTCTTCCAAGAAATTGTATGAGGATAATGAATATGCTCTTTATACTGTAACACTCTTCAGTCTTGTTGCAGACAACTTTAGAACAAATGCACGTGAAAGGGGATTCCAAATTCGTGATTTTGAATACCGTCCAGAAACACATGAGAGTCGGAAGAAGGAGTTAGAAAATTTGATGCAAGATCAGGAAAGTTTGAGAGGTTCTCTGTTGCAGTGGTGTTATATCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACGATTTTTCCTGGTAGATATACTCTTCCAAACCCTGTAG 867 0.4118 MATSYWAVSLPVQNAASAIWNQLRERISKHSFDTPLYRVLFPPPFPCDFIEGVSLKIWRQIEELERVSGVESSGLTVDEVPVDSYLTSLVFLMEGLFGMKQSTRLPMSPLKEIVDHIHGQVAKIEDVLKLTFLEGLSFCKTKKRLAVRDLSNLVKPEDIITSEHLTTLLAIVSKSSKKLYEDNEYALYTVTLFSLVADNFRTNARERGFQIRDFEYRPETHESRKKELENLMQDQESLRGSLLQWCYISYGEVFSSWMHFCAVRVFAESILRYGLPRFFLVDILFQTL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1677 288 SUPERFAMILY Vacuolar ATP synthase subunit C 2 285 IPR036132 GO:0015078|GO:0033180|GO:1902600
Glsi11g1677 288 Gene3D - 138 174 - -
Glsi11g1677 288 Gene3D - 175 231 - -
Glsi11g1677 288 CDD V-ATPase_C 5 280 IPR004907 GO:0033180|GO:0046961|GO:1902600
Glsi11g1677 288 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 49 176 IPR004907 GO:0033180|GO:0046961|GO:1902600
Glsi11g1677 288 Pfam V-ATPase subunit C 49 175 IPR004907 GO:0033180|GO:0046961|GO:1902600
Glsi11g1677 288 Pfam V-ATPase subunit C 171 281 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1677 Glsi-ChrGlsi11 10513711 10518070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1677 1 284 Primary Pumps ATPases(2) AT1G12840 58.055 5.05e-119 344