Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1671 ATGGAGAGAGAGATGCTACCTAGAGCTCATGGCGTCCCTTGGATGGAAGAAGAAGTTGAAGACGCGGCATCTTGGACCAGAACTAACAACGAAGGTGAGCCTAAGGACGAGGACATTGCCATGGGGGGCCCTCTAACTTCCTTTAAATCCATGCTTGAAGGTGACTGGTACATGAACTCTGCTATTAATCCATCCCATCAGGACCTCCCTGGTCTCCCAAATCACCAAGAATCCAGAGATATTGGCTTTTGTTCAAATCCAACTGATAATTTCCTGTTACAGCCTATGGATTCGTCTTCTTGTTCACCATCATTTACGATTGACCCGTCACAGTCACAGCCTTTTTTACCACCCAAATCGTGCTTCCCTTCTCTCTTCAATGTTGCTTGCAACAACCCTTTTGACAATGGCTTCGATTTGGGCTCTGAGAGTGGGTTTCTCGCTCCGTACCAGGGAAATCAGTCTTCAAATTCCCCTGTTTTGATGGGTTTTTCGGGCTTGAATACTCAACCTCAGATGGGCAACCTCGAACTTAGCACAAGCTCTGAGTTCCCAGCAACTCGGCTGCTGCCAGTTGCTGACAATGCTGTCGCACTTGGGGGCGGATTTAGTCCGATGGGTTTAGAAGGATTTGATAGTTCCGGAAGTGCTCTGTTTTTAAACAAGGCTAAGGTTTTAAGACCACTTGATGTTTTCCCCCCAGTTGATGCGCAACCCACTCTCTTTCAGAAGCGAGCTGCGCTTCGCCAAAGCTCCGGTGGAACTGATAAGTTGGGAACTTTGGAGATTTCGTCGTCGAGATTTGAGGATTATTCAACGAGGCTGGTGAGCATGGAGAGGAAGAGAAATCTAGCAGAAGAGGGCGAAATTGAGGAAGCTAGCATCGATGCGTCAGGGTTGAATTATGATTCTGATGACCTTAATGAGAATAATAAGGTGGTTGACAATGGGAATAATGGGGGAAGCAATTCTAATGCAAATAGTACCGTCACAGGCGGAGACCCAAAGGGGAAGAAGAAGGGGTTACCAGCGAAAAATCTCATGGCTGAAAGAAGGCGTAGGAAGAAACTAAATGATAGGTTGTACATGCTTCGGTCGGTTGTGCCGAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCGATTGACTACTTGAAGGAGCTACTGCAGCGGATTAACGATCTTCATAATGAGCTGGAATCAACCCCACCTGGTTCATTGCCGCCACCTTCTACAGGCTTTCACCCTTTGACACCTTCTCTGCCAACCCTTCCCTGCCGGGTCAAGGAAGAACTATGCCATACCTCCTTGCCAAGCCCTAAAAACCAACCTGCAAGAGTGGAGGTTAGGTTAAGGGAAGGAAGAGCTGTCAACATCCATATGTTTTGTGCCCGTAGACCAGGTCTTTTGCTATCTGCCATGAGGGCTTTGGACAATCTTGGATTGGACGTTCAGCAGGCTGTTATCAGCTGTTTCAATGGCTTTGCTTTAGACGTGTTCAGAGCTGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCAGTACTGTTGGATTCAGCGGGTTGCCATGGTATGATGTGA 1599 0.4765 MEREMLPRAHGVPWMEEEVEDAASWTRTNNEGEPKDEDIAMGGPLTSFKSMLEGDWYMNSAINPSHQDLPGLPNHQESRDIGFCSNPTDNFLLQPMDSSSCSPSFTIDPSQSQPFLPPKSCFPSLFNVACNNPFDNGFDLGSESGFLAPYQGNQSSNSPVLMGFSGLNTQPQMGNLELSTSSEFPATRLLPVADNAVALGGGFSPMGLEGFDSSGSALFLNKAKVLRPLDVFPPVDAQPTLFQKRAALRQSSGGTDKLGTLEISSSRFEDYSTRLVSMERKRNLAEEGEIEEASIDASGLNYDSDDLNENNKVVDNGNNGGSNSNANSTVTGGDPKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPPPSTGFHPLTPSLPTLPCRVKEELCHTSLPSPKNQPARVEVRLREGRAVNIHMFCARRPGLLLSAMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGCHGMM 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1671 532 Gene3D - 337 404 IPR036638 GO:0046983
Glsi11g1671 532 CDD bHLH_AtAMS_like 344 411 - -
Glsi11g1671 532 MobiDBLite consensus disorder prediction 308 342 - -
Glsi11g1671 532 CDD ACT_UUR-ACR-like 461 521 - -
Glsi11g1671 532 MobiDBLite consensus disorder prediction 308 332 - -
Glsi11g1671 532 FunFam BHLH transcription factor 337 405 - -
Glsi11g1671 532 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 234 528 - -
Glsi11g1671 532 Pfam Helix-loop-helix DNA-binding domain 348 390 IPR011598 GO:0046983
Glsi11g1671 532 Coils Coil 384 404 - -
Glsi11g1671 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 341 390 IPR011598 GO:0046983
Glsi11g1671 532 SMART finulus 347 396 IPR011598 GO:0046983
Glsi11g1671 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 411 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1671 Glsi-ChrGlsi11 10462221 10465950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1671 24 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 57.201 2.78e-156 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g1671 HLH 2.2e-09 No_clan