Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1665 ATGCTTTTGCGCAGCGTTATTCTGTTTTGGCATATTGGAGCAACAATTCTTCTGCAACGTAGAATCTCGTCAAGTTTATCTGACTTGTCTTGGCTGTTCACATTGACGAACCTCCCCTTTCCTTCCAAAATTTTCATGTCCATCTTGCCCTCACAAACCCAGGCATCAACCTCGTCGTCTTCTCCATCTGCTCCGTCTCCCAACCCTAATTCCCAACATGGAAACCCCATTCACCCACCTTGTTCTCCTTCATCCCTCTCCTCTGTTTCCCTTCAAGTTCAATCATTCGGATCTCTCCGGATCTCCGATTCCCAATCTCCCGTCGCTATACCTGACGACATTTCAGGTCCATCAACTCCAGCTGCAGAAGATTCCGGTGGACTTTCCAAAAAGGTAACAGAGTTAGGATCTCCAAGTGGTATGAAGACTTTGCCTCACCAAAAGTCCAGAACACATTCTAGGAATCACTCAGGAAGACGGCCAGTTAAATCATCCCAGTCAGCAGTGAAGACAACAGGAACAGTTTCATCCCCTGGAGATCTACAAATTATTGGGTCTGTAAATTCTCATGGAAGCACCCCTTCAGCAGGAAGAAAATCTCAGATGGTTAATGGTAATCACTTGCTGAACTTTCATTATGATCCCATATCCCGTTCTCAATCAAGGGGTCCTCCTCCTCCCCCATCAAGAAGGCAGCAGAAGAAAAAACCGTACAACAAAGATTTATTTCTGCAGGCAAATTTCAAATTCATGGTGTTAGACTCAGGAAACTATACGCCTGAGTCTTTGGATCCTGATAAAATGTTACAGTGGGAAGATATTATATGTCTGAGGTATTCCACCCCATTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCTCTATGTCCGCAAATAACCTCTTGTGGGCATATTTTTTGTTTTCCATGTATCTTACAATACTTGATGATGGGTGAAGAAGATCTCAAAGGTGATTGCTGGAAAAGGTGTCCCTTATGTTTTGTGATGATATCTGCAAAGGATTTATATACCATTTACATTGAAAATGTCAAGCAATATCGAGTGGGAGATAATGTCAAGTTCACACTTTTAACTCGAAAAAAAGATTCCTGTACTCTATCTTACAAAAATAAACAAGAGCTAGATGACATATCATGTGGCAATAGTAATTTATGTGATCTCTTTTCTAAGATCACACTCACGTCAGATGTAGATCTCTCAGTGAGACAGGCAATATCAGATCTAGATAGTTGGCTGGCCAGAGCTGATTCCGGTCTTGTTGATGACCTGGAGAAACTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAAGTTTTGGAACGAGCACAGGGCTTGTGATGGGGAAAAACCCTCTAAACTTATTGATTGTGGACATCCTGTGCCATCAACAGCTGTAAATGCTACTGATGCTGATGATGAAACCCGTTCGAATGGATCAGGAACTTCATCTACAGATTTCCATGACCAAAGTAAGGGTATGATATTGGATACGTCAAATGCAGCAGCCTGTCCGGATCAAACTGTGGATGTGGAGAAAGTACTAGAGCAAGAAATTAATTTATCTTCTTCCTATGAGGAGAAAAACAGTATCCAAAGGAACTCAAATGGTTTTGGAGATGCAAAAGAAAGTGACTCGTACAATTTCTACCAGGCTGCTGATGGTCAGCATCTTATTCTTCATCCACTGAACATGAAGTGTCTACTTCACCATTATGGGAGCTATGATATGCTTCCACACAGAATATGTGGAAAGATTCTTCAATTGGAGACAGCCACTCAGTCAGAGGCCATGAGAAGGCGGTACCGATATTTGAGTCATTTTCCTTTAACAACAACTTTTCAGCTTTGTGAAATTGATTTGAGTGAGATATTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATGAAGAAGCGCTCAAACCAGAGGAGGCAACTTGCAAAGAAGGAACGAAAGGAGAAAATCCAGGCTGAAGCTGCTTCCACATATTCTCTTCCCACACCAACCAGTTTTAAACTCATGTCTCATGACGATTCTCCCACATTCTCCGTGGATGATTTTGAAGCTTTGGGAAATTCTGCCGTGTCATCAAGTCCTCCAGTTGTTGGGGAGAGAAAATTGTTCTCAAGTGTTACAAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATCCTTGAACATTCAAGAAACTAGTGGTCTACATAATCAGAATATGACAACTGATTCTTCTCGCACAACAGGTTTGAGGAATGTGGAGACACCATCATTTGCCAATGTTATATCCAGATCAGAGTCTATTAATAGCTTGAATGCACCCAAGACCAGTGACTTGGGGAAGAAGGGGAAGAAACCAAGTCGAGTTCTTCTGTCAACAGCTGGTGGGAGGCGTTATTGA 2427 0.4223 MLLRSVILFWHIGATILLQRRISSSLSDLSWLFTLTNLPFPSKIFMSILPSQTQASTSSSSPSAPSPNPNSQHGNPIHPPCSPSSLSSVSLQVQSFGSLRISDSQSPVAIPDDISGPSTPAAEDSGGLSKKVTELGSPSGMKTLPHQKSRTHSRNHSGRRPVKSSQSAVKTTGTVSSPGDLQIIGSVNSHGSTPSAGRKSQMVNGNHLLNFHYDPISRSQSRGPPPPPSRRQQKKKPYNKDLFLQANFKFMVLDSGNYTPESLDPDKMLQWEDIICLRYSTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDLKGDCWKRCPLCFVMISAKDLYTIYIENVKQYRVGDNVKFTLLTRKKDSCTLSYKNKQELDDISCGNSNLCDLFSKITLTSDVDLSVRQAISDLDSWLARADSGLVDDLEKLPYVCAAMQQLEQRKKFWNEHRACDGEKPSKLIDCGHPVPSTAVNATDADDETRSNGSGTSSTDFHDQSKGMILDTSNAAACPDQTVDVEKVLEQEINLSSSYEEKNSIQRNSNGFGDAKESDSYNFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRICGKILQLETATQSEAMRRRYRYLSHFPLTTTFQLCEIDLSEILPPEALAPFMDEMKKRSNQRRQLAKKERKEKIQAEAASTYSLPTPTSFKLMSHDDSPTFSVDDFEALGNSAVSSSPPVVGERKLFSSVTRLGFAAGHDSPSLNIQETSGLHNQNMTTDSSRTTGLRNVETPSFANVISRSESINSLNAPKTSDLGKKGKKPSRVLLSTAGGRRY 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1665 808 MobiDBLite consensus disorder prediction 478 501 - -
Glsi11g1665 808 FunFam RING finger protein 10 280 348 - -
Glsi11g1665 808 ProSiteProfiles Zinc finger RING-type profile. 287 333 IPR001841 -
Glsi11g1665 808 ProSitePatterns Zinc finger RING-type signature. 302 311 IPR017907 -
Glsi11g1665 808 MobiDBLite consensus disorder prediction 214 236 - -
Glsi11g1665 808 SUPERFAMILY RING/U-box 286 339 - -
Glsi11g1665 808 MobiDBLite consensus disorder prediction 160 201 - -
Glsi11g1665 808 Pfam Zinc finger, C3HC4 type (RING finger) 287 333 IPR018957 GO:0046872
Glsi11g1665 808 MobiDBLite consensus disorder prediction 55 86 - -
Glsi11g1665 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 348 IPR013083 -
Glsi11g1665 808 CDD RING-HC_RNF10 285 342 - -
Glsi11g1665 808 PANTHER RING FINGER 10 FAMILY MEMBER 119 808 IPR039739 -
Glsi11g1665 808 MobiDBLite consensus disorder prediction 467 501 - -
Glsi11g1665 808 MobiDBLite consensus disorder prediction 778 808 - -
Glsi11g1665 808 SMART ring_2 287 333 IPR001841 -
Glsi11g1665 808 MobiDBLite consensus disorder prediction 102 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1665 Glsi-ChrGlsi11 10436168 10443231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1665 117 758 C3H Transcription Factor Family AT3G26730 52.317 0.0 634