Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1662 ATGGTTGCGCAATCGTTGAACTGTGCAGCTCCAATTCAAAGTTCTATTGCTAACGGTGAGCTCGGGACTGAAGTGGGTGGTGGTGGTTCGCGGCATTTGATAGTTTCAAGTGGTTTTCGGGCCGAGATGAGCCCCAAGCGTAATATTATGAAGGATAGTAGGAAATGTGACAAAACTGAAGAACCAAAAGAGTCAAAAGAATCGTCAATGCAGAGAAGAGTCAGTCCTCGAATCCAAGCCAAGCAAAAAGTGGATAATGCTGGTGATATGAAGAAGAGTACGCCCTGCAAAGGAAGCGGTAACTACGACCATGTAGGTAAGGAAAAGGGAGCGGGGGAGCAACAGAGAGTTAAGAAGTTGGATGAGTCAACAGCTGAAGGACCAGAAGAGTCGAAGGAATCGTCATTGCAGAGGAGAGCTAGTCCTCGAATCCAAGCCAAACTAAAAGTGGATAAGGAACTTTTAGTGCGCCGCCGAGTAGAGCTGCTAGACGAACGAGATGATGCTGGTGATGGGAAGAAGAAGAGTAACCGCTGCAAAAGAAACCGCAACGACGAGAACGTGGGTAAGGAACAGGTAGTAGGTGAGCAGCGGAAAGTAAAGAAGATGGATGAGTCGACTTTGCTTGATGACAAACCGACAATTGCGGGTTCGGATGAAATTGTTGATTCTGTTAATGGGGCAGGGAATTTGGTTGAAAAAAGTGATTTTGTTAAGGTGAAAGAGACGCTGAGGTTGTTTAACAAGCACTATCTTCATATGGTCCAGGAGGAGGAGAAGAGGTGTGAGAAAGTGAAAGCTGACCGGAAAGTGTCTAAAAAGGGTTCGAAATCTAAGAAAGGTGCGCCACCTGAAGATACAAAGAGCTCTGCTAAGCGGCCTGATTTGAAAGCAATATCCAAGGCAAGTATTAACGTTGGACATCAGTTTTATTCGCGTGCTGAAATGGTTGCTGTTGGTTTTCATAGCCACTGGCTAAATGGCATTGATTTTATGGGTATATCCTATGGCAAAGTGGTAATGCAGTTTGTTCTTGCTATGTACAGTAACTATAATTTCCCACTTGCCGTGGCCATTGTTTTGTCGGGCATGTATGAGGATGATCTTGATAATGCTGAGGATGTTGTGTATACTGGTCAAGGTGGACATAATTTGACTGGTGATAAGCGACAAATTCGGGATCAGGTGTTGGAGCGGGGTAATCTGGCGCTCAAGAACTGTGTCGAGCAACATGTGCCAGTAAGGGTGGTTCGTGGACATGAGTCGTCAAGCAGTTATTGTGGCAAAGTTTACACTTATGATGGCTTGTATAAGGTTGTAAATTATTGGGCTGAAAAGGGAATATCCGGGTTTACGGTATATAAGTTTCGGCTTAGGAGACTTGAAGGGCAGCCAACCTTGACTACTAATCAGGTTTATTTTTCTAATGGACGTGTCCCTCGGTCTATTGCTGAAATACGAGGGCTCGTGTGTGAGGACATCACCAAAGGCCAAGAAGATATGCCCATACCTGTCACTAATCTGGTTGATGACCCCCCTGTTGCTCCCACAGGTTTCAAATATAGAAAGTCAATTTTGATTTCAAAAAATGTGAAGTTCCCCATTGATGCCACTGGGTGCAAATGCAAAGGCATTTGTGTTGATCCCACATCTTGTGAATGTGCATTGCGAAATGGCTCTGATTTCCCCTATGTATCTCGTGATGGCGGCAGATTAATTGAAGCAAAGGATGTTGTCTTTGAATGTGGGCCAAAATGTCGATGTGGCCCTGGTTGTGTTAATAGAACTTCTCAACGAGGGTTGAGATATCGTCTTGAGATTTTTCGGACTCCAAAAAAAGGATGGGCAGTTAGATCTTGGGATTTCATACCTTCCGGAGCACCAGTTTGTGAGTACACAGGACTACTCAGGAGGACAGAAGATCTTGAAAATGCATCTGAGAACAATTATATTTTTGAGATCGATTGTTTGCAAACAATGAAGGGCCTTGATGGAAGAGAGAGGCGGTCTCAAAATGAAGTGCTTACAGCCATTAATCTTCTGGACAAATCTGAGGATCTTATTTCTGATAGCGTGCCAGAGTTCTGTATTGATGCAGGCTCAACTGGTAACATTGCTCGATTTATAAATCATAGTTGTGAACCTAATCTTTTTGTTCAATGTGTTTTGAGTTCACACCAGGATTTAAAACTTGCTCGAGTGATGCTGTTTGCTGCAGACAACATACCTCCTCTGCAGGAACTAAGTTATGACTATGGTTATGTTCTTGATAGCGTTTTGGGTCCCGACGGAAAGATAAAGAAAATGGCATGCTATTGTGGAGCTGCAGATTGCAAGAAGCGATTATTTTAA 2352 0.4375 MVAQSLNCAAPIQSSIANGELGTEVGGGGSRHLIVSSGFRAEMSPKRNIMKDSRKCDKTEEPKESKESSMQRRVSPRIQAKQKVDNAGDMKKSTPCKGSGNYDHVGKEKGAGEQQRVKKLDESTAEGPEESKESSLQRRASPRIQAKLKVDKELLVRRRVELLDERDDAGDGKKKSNRCKRNRNDENVGKEQVVGEQRKVKKMDESTLLDDKPTIAGSDEIVDSVNGAGNLVEKSDFVKVKETLRLFNKHYLHMVQEEEKRCEKVKADRKVSKKGSKSKKGAPPEDTKSSAKRPDLKAISKASINVGHQFYSRAEMVAVGFHSHWLNGIDFMGISYGKVVMQFVLAMYSNYNFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQVLERGNLALKNCVEQHVPVRVVRGHESSSSYCGKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRLEGQPTLTTNQVYFSNGRVPRSIAEIRGLVCEDITKGQEDMPIPVTNLVDDPPVAPTGFKYRKSILISKNVKFPIDATGCKCKGICVDPTSCECALRNGSDFPYVSRDGGRLIEAKDVVFECGPKCRCGPGCVNRTSQRGLRYRLEIFRTPKKGWAVRSWDFIPSGAPVCEYTGLLRRTEDLENASENNYIFEIDCLQTMKGLDGRERRSQNEVLTAINLLDKSEDLISDSVPEFCIDAGSTGNIARFINHSCEPNLFVQCVLSSHQDLKLARVMLFAADNIPPLQELSYDYGYVLDSVLGPDGKIKKMACYCGAADCKKRLF 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1662 783 ProSiteProfiles Post-SET domain profile. 767 783 IPR003616 -
Glsi11g1662 783 MobiDBLite consensus disorder prediction 45 71 - -
Glsi11g1662 783 ProSiteProfiles SET domain profile. 603 753 IPR001214 GO:0005515
Glsi11g1662 783 ProSiteProfiles Pre-SET domain profile. 538 600 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi11g1662 783 MobiDBLite consensus disorder prediction 264 294 - -
Glsi11g1662 783 Pfam Pre-SET motif 494 595 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi11g1662 783 SUPERFAMILY PUA domain-like 303 480 IPR015947 -
Glsi11g1662 783 ProSiteProfiles YDG domain profile. 299 460 IPR003105 -
Glsi11g1662 783 SMART preset_2 491 587 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi11g1662 783 MobiDBLite consensus disorder prediction 166 199 - -
Glsi11g1662 783 Pfam SET domain 614 753 IPR001214 GO:0005515
Glsi11g1662 783 Pfam SAD/SRA domain 303 464 IPR003105 -
Glsi11g1662 783 Gene3D SET domain 484 783 IPR046341 -
Glsi11g1662 783 MobiDBLite consensus disorder prediction 278 294 - -
Glsi11g1662 783 SMART set_7 603 759 IPR001214 GO:0005515
Glsi11g1662 783 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 78 776 - -
Glsi11g1662 783 MobiDBLite consensus disorder prediction 37 144 - -
Glsi11g1662 783 SMART G9a_1 295 464 IPR003105 -
Glsi11g1662 783 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 152 783 IPR025794 GO:0016571
Glsi11g1662 783 Gene3D - 289 477 IPR036987 -
Glsi11g1662 783 SUPERFAMILY SET domain 488 760 IPR046341 -
Glsi11g1662 783 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1662 Glsi-ChrGlsi11 10403979 10421811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1662 304 783 EF-hand Containing Proteins AT5G13960 66.112 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi11g1662 SAD_SRA 3.8e-46 CL0178