Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1659 ATGTTTCCTGTTTACCCATCGCTATCTGAGACCCAAAAGGAAGAAACTTCAGTACCCTCTCCCTTTCAATATCTTATCAGCACCAGTAGTGATGCCAACTTCCCAATCCCAATCCCAATCCCACGCGGGCAAGTAAGCGCATCTTCTGGCTTGATCGAGAAGAACCCCTCCCAGCCTCCACACCAAGGCGATCTTGTAAGGAAAAAACATTATAGAGGAGTAAGGCAGAGACCGTGGGGCAAATGGGCAGCCGAAATCCGAGACCCTAAAAAGGCAGCAAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCAGCAGCCGCTGCTTATGATGCTGCAGCCTTGAAGTTCAAAGGAACCAAAGCCAAGCTCAATTTTCCCGAACGCGTAGCTTTTGAAACCAACCCTTCAGCTTCTGCACAGCTTTCTACCACCCCAGCTGCTTCTGAGGCGTCGCCACCAGTTTCTTATCAACCTCCACCACCTCCTTTGCCGGTCGACGAGGTGTTCCCAAACCTAATGCAGTACGCGCAGCTGCTTTGCAGTAGGGACGATGCTGATCTACAACGTGCTGCTTCCAGACTTTATTATGATCAGAATGAGCCATTTCTTTATGATTCTTCATTCTTCTCATCATCATCGTCAGCAGTGCCTTCGTCAAATTCCATGGCTGTATCTGATCAGCTTCAAGATACCCAGGGTGCGCAGAAGGGAGATGGTGGTTCTTCTGGTTCTTATTTTTTTTATCAAGGGAGTGCTTTTGATGAAAGCAACACATAG 780 0.4885 MFPVYPSLSETQKEETSVPSPFQYLISTSSDANFPIPIPIPRGQVSASSGLIEKNPSQPPHQGDLVRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGTKAKLNFPERVAFETNPSASAQLSTTPAASEASPPVSYQPPPPPLPVDEVFPNLMQYAQLLCSRDDADLQRAASRLYYDQNEPFLYDSSFFSSSSSAVPSSNSMAVSDQLQDTQGAQKGDGGSSGSYFFYQGSAFDESNT 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1659 259 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Glsi11g1659 259 MobiDBLite consensus disorder prediction 135 152 - -
Glsi11g1659 259 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Glsi11g1659 259 MobiDBLite consensus disorder prediction 219 259 - -
Glsi11g1659 259 Gene3D AP2/ERF domain 69 129 IPR036955 GO:0003700|GO:0006355
Glsi11g1659 259 SUPERFAMILY DNA-binding domain 70 128 IPR016177 GO:0003677
Glsi11g1659 259 MobiDBLite consensus disorder prediction 135 164 - -
Glsi11g1659 259 PANTHER DNA-BINDING DOMAIN 57 212 IPR044808 GO:0003700|GO:0009873
Glsi11g1659 259 CDD AP2 69 128 IPR001471 GO:0003700|GO:0006355
Glsi11g1659 259 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Glsi11g1659 259 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Glsi11g1659 259 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Glsi11g1659 259 Pfam AP2 domain 70 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1659 Glsi-ChrGlsi11 10382585 10383990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1659 45 196 AP2-EREBP Transcription Factor Family AT5G13330 53.254 3.49e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g1659 AP2 1.3e-14 CL0081