Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1654 ATGGCTCTTCTTCTTTGTCTCCTTTTTCTTGCCTTTGTCTTTCTATTCACTGCCCATAACTCGAAAGCTCTTACTACTTCGATTCATAGCGACGCATTGTCCCTTCTCAGCTTCAAGGACTCGGTCTCTTCCGACCCTTCTAACCTCCTCTCTGGATGGAGAAACAACTCTTCCAGCAGTGCCTGTCAGTGGCACGGCGTCACCTGTGACAGGAGGCTCTCAGGCAGAGTTATTTCTTTGAATGTTACCGGACGTCTCGGCGGCAAACTCAATCCTTCCATTGGAGACATATCTGAACTTCGGGTTTTATCCATTCCCCACAATATGTTCTCCGGTGAGATCCCAGTGAGTATAGGGAAGCTTCGGCTGCTGGAGGTTCTTGAGCTCCAAGGAAACAACTTTTCCGGGAAGATCCCCAACCAGATAAGCTATCTTCCATCTCTTCGCCTTCTTAATCTCTCCAATAATGCTTTCTCTGGTTCAGTACCCAGTAAATTGATTGGCTCTGGAAATGTTAGCGTCCTTGACTTATCGAGTAACCAACTTTACGGTCCAATTCCGGTAGATAGTTTGAGTGTCTGTAATGTTTTGAATTATTTGAAACTGTCCCACAACTTTCTTACCGGCAAAATCCCCTCCCAAATCGGGAAATGCCGAAATCTGAGGACCCTTTTACTCGATGGGAATATCTTAGAAGGTAGTATCCCTCCCGAGATCGGGTATATTATGGAACTTAGAGTTCTGGATGTTTCTAGAAATAGTCTCACTGAAAGGATTCCAAAAGAGATATCTAGCTGCCGGAAATTGTCTGTGCTTGTGTTGACTGATTTATTCGATGATCAAACTTCTGCTAATGGGAGGTTGGTGAATAGCGTCGGAGGAGAATTCAATGCCTTTGTTGGGAAAATTCCTCCTGAAGTGTTGTTACTTCCAAGTTTACAGCTTTTGTGGGCTCCAAGAGCAAATCTTGGTGGACTGTTGCCCAGGGGATGGACACATTCATGCTCTCTGAGAGTACTCAACTTGGCTCAGAATTATGTTACTGGAGTGATACCAGAAAGTTTGGGGATGTGTAGAAATTTAACTTTCTTGGACTTGAGTTCAAACAATTTAGTGGGGCACCTTCCTTCAAAGCATCTTCAAGTTCCATGTATGATGTACTTCAATGTCAGCAGGAATAATATATCTGGCACACTTCCAGGATTTGGGATGGAAAGCTGTGATATAAGCAGAACCCCTGCTGCACAAGAACCCAAGTTCCTAGCCATTGAAATTCTTAATCATGCATACTTTGACATTCCAGTTTGGAAATCTCAGATGAAGGCTCTTATTGGATCAGATTTACAAGAGGTTGTTGTCATTAGCCATGATTTCAGTTGGAACAGCTTCATGGGATCTTTACCTTTATTCTCACTAGGAGATAATCTTTCTGCTACAAACCGTATGCTCTCCTATACGCTGTCACTAAATAATAATAAGTTCGATGGAGCTCTTCCAAATCATCTGGTTTCAGACCATAATAATCTCAAAACGTTGACGGTTAACTTGAGTGTGAACCAGCTGTCAGGTGTGAATTCCCAACAATTGCTTCTGGACTGCTTGCAGTTGACAGAGTTTGAAGCAGCATACAACCAGATTGGGGGGTCAATTGCTTCTGGTATTGGTAACTGTACTGTGCTTCAACGCCTTGATTTGAGGGGAAACAAACTATCCGGGTCTCTGCCTGATCAGTTGGGAAACCTTAAAAACTTGAAATGGATGCTCCTAGGAGGAAACAAACTAACAGGAGAAATCCCTTCTCAGCTTGGTCAGTTGGCTTTCCTTGCTGTTTTGGATTTATCTCACAATTCTCTAACTGGAGAAATTCCTGCAAGTTTGACAAATGCCACAACTCTTGAAATTCTGCTTCTAGATCACAACAAACTTGATGGGGAAATACCTTCATCTTTTTCCACTCTTTCCAGTCTTGTTAAGCTGGATGTTTCTTTCAACAACCTTTCTGGTCATATTCCCCATCTTCAACCCCCAAGTGATTGTAAATCCTACAGAGGGAACCAACACCTGCATTCTTGCCCTGATCCATACTCTGCCACACCTGCTTATCTCCCAGTCCCTCTTGAAGTCAAAAATCTGCATAGACGAAGAAAATTGAAGAGTGTGATAATTGCTGTGGTCACTTCAGTTTCTGTGACTCTCTTTGTACTTCTGGGAATAATATTGGTGATCACTTTTGGAAGGAGCAAGGTTGGTCGGCTTAGCAGTCATAGAAGGAGACTACTAGTGACCTTTCAAGATGTTCCAATTGAACTGAGTTACGACAATGTGGTCACAGCCACAGGAAATTTCAGCATCCAAAATCTAATTGGCACAGGCGGCTTTGGGTCTACTTACAAGGCAGAACTATCCCCTGGTTTCCTTGTTGCCATAAAGAGGTTGTCCATATGTAGATTTCAAGGCATTCAACAGTTTGAAACAGAGATAAGGACATTAGGGAGAATTCGTCACAAAAACCTCGTAACTCTCATTGGTTATTACGTAGGAGAGTCTGAAATGTTCTTGATATACAACTACCTCTCTGGTGGGAACCTTGAAACTTTCATACATGACAGATCAGACAAAAATGTGTTGTGGCCAATTATTCTCAAGATAGCAATAGACGTAGCAGAGGCCATTGCCTACCTTCATTATTCCTGTGTTCCTCGCATAGTTCACCGGGATATCAAACCTAGTAACATCTTACTTGACGAGGATCTTAATGCCTACCTTTCGGATTTTGGCTTGGCAAGACTCATGGAGGTATCTGAGACCCATGCCACTACTGACGTGGCAGGCACATTTGGGTATGTTGCACCTGAATATGCCACCACTTGCAGGGTTTCTGACAAGGCAGATGTTTACAGCTTTGGTGTTGTGTTACTAGAATTAATGTCAGGAAGAAAGTCTCTGGATCCATCATTTTCTGAATATGGGAATGGTTTCAACATTGTACCCTGGGCCAAGTTGCTTATGACAGAAGGTCGTTCTTCTGAGCTATTCTCGCCTGCTTTGTGGGAAGCAGTGCCGGAGGAAAAATTGTTGGGAGTTTTAAGGCTTGCATTAGTTTGCACAGTGGAGACGCTTTCTATTCGGCCATCAATGAAGCAGGTTCTTGAGAAATTGAAACTACTGATAAATTGA 3177 0.4297 MALLLCLLFLAFVFLFTAHNSKALTTSIHSDALSLLSFKDSVSSDPSNLLSGWRNNSSSSACQWHGVTCDRRLSGRVISLNVTGRLGGKLNPSIGDISELRVLSIPHNMFSGEIPVSIGKLRLLEVLELQGNNFSGKIPNQISYLPSLRLLNLSNNAFSGSVPSKLIGSGNVSVLDLSSNQLYGPIPVDSLSVCNVLNYLKLSHNFLTGKIPSQIGKCRNLRTLLLDGNILEGSIPPEIGYIMELRVLDVSRNSLTERIPKEISSCRKLSVLVLTDLFDDQTSANGRLVNSVGGEFNAFVGKIPPEVLLLPSLQLLWAPRANLGGLLPRGWTHSCSLRVLNLAQNYVTGVIPESLGMCRNLTFLDLSSNNLVGHLPSKHLQVPCMMYFNVSRNNISGTLPGFGMESCDISRTPAAQEPKFLAIEILNHAYFDIPVWKSQMKALIGSDLQEVVVISHDFSWNSFMGSLPLFSLGDNLSATNRMLSYTLSLNNNKFDGALPNHLVSDHNNLKTLTVNLSVNQLSGVNSQQLLLDCLQLTEFEAAYNQIGGSIASGIGNCTVLQRLDLRGNKLSGSLPDQLGNLKNLKWMLLGGNKLTGEIPSQLGQLAFLAVLDLSHNSLTGEIPASLTNATTLEILLLDHNKLDGEIPSSFSTLSSLVKLDVSFNNLSGHIPHLQPPSDCKSYRGNQHLHSCPDPYSATPAYLPVPLEVKNLHRRRKLKSVIIAVVTSVSVTLFVLLGIILVITFGRSKVGRLSSHRRRLLVTFQDVPIELSYDNVVTATGNFSIQNLIGTGGFGSTYKAELSPGFLVAIKRLSICRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGESEMFLIYNYLSGGNLETFIHDRSDKNVLWPIILKIAIDVAEAIAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLMEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAKLLMTEGRSSELFSPALWEAVPEEKLLGVLRLALVCTVETLSIRPSMKQVLEKLKLLIN 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1654 1058 SUPERFAMILY RNI-like 87 398 - -
Glsi11g1654 1058 SMART serkin_6 782 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1654 1058 SUPERFAMILY Protein kinase-like (PK-like) 760 1053 IPR011009 -
Glsi11g1654 1058 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524
Glsi11g1654 1058 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Glsi11g1654 1058 CDD STKc_IRAK 788 1056 - -
Glsi11g1654 1058 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 432 699 - -
Glsi11g1654 1058 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 189 278 - -
Glsi11g1654 1058 Gene3D Phosphorylase Kinase; domain 1 744 857 - -
Glsi11g1654 1058 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 858 1058 - -
Glsi11g1654 1058 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Glsi11g1654 1058 Gene3D Ribonuclease Inhibitor 432 687 IPR032675 -
Glsi11g1654 1058 Gene3D Ribonuclease Inhibitor 86 278 IPR032675 -
Glsi11g1654 1058 Pfam Protein kinase domain 784 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1654 1058 FunFam Leucine-rich repeat receptor-like protein kinase 28 188 - -
Glsi11g1654 1058 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 746 857 - -
Glsi11g1654 1058 Gene3D Ribonuclease Inhibitor 24 85 IPR032675 -
Glsi11g1654 1058 ProSiteProfiles Protein kinase domain profile. 782 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1654 1058 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Glsi11g1654 1058 Gene3D Transferase(Phosphotransferase) domain 1 858 1056 - -
Glsi11g1654 1058 SUPERFAMILY L domain-like 299 679 - -
Glsi11g1654 1058 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 297 1052 - -
Glsi11g1654 1058 Gene3D Ribonuclease Inhibitor 279 416 IPR032675 -
Glsi11g1654 1058 Pfam Leucine Rich Repeat 360 381 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1654 Glsi-ChrGlsi11 10343503 10346679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1654 5 1056 Receptor kinase-like Gene Family AT3G02130 43.395 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Glsi11g1654 Pkinase 4.7e-41 CL0016