LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g1643	ATGATGAACCCATTTACATCGTCGTCGTCCAAGGCCAAAAAGAAGCAAACGGCGACAACAAGCACCGCGACAGCAATGACACAAGAGCAAAAACATGAAACGGCATGGGGAGGGAGGTACCTGGGTGTTCGGAGGAGGCCATGGGGAAGATACGCGGCGGAGATTAGAGACCCTTCCACCAAAGAAAGGCATTGGCTTGGCACCTTCGACACTGCCGAAGAAGCTGCGTTGGCATACGACAGAGCAGCTCGGTCCATGCGCGGCTCACGTGCCCGAACCAACTTCGTCTACTCCGACACCCCACCGGGTTCTTCCGTCACCTCCATTATCTCCCCCGATGAACAAACCCAGGAGAACCATGACTTCTCGTCTCTTTTTGCTCCGAATTCGCTCACCCAGCAATGCGACCCGAGTTTCCAGCTGGCCGAATCCAACCTCCCGGACGGGTTCCTTGGGATTATGGATAGTAACGCCTGGGCATCACCTTCTTCTGGAGCTTATGCACAACATCAAGTGCCCACCATGGACGCCCACAACGTAAACCATTTCCAACAACTGTATGATGATAGTAAGACGGAGCTTCCTCCATTGCCACCAGACATCACCAGTTCCACGGGGTATGAAATGGGGCATGGGTTTTACAATAACGAATTTGGGTATTCGGAGCAGAGCAGCGGGGCTACGTACTCGTACATGGATTTTGATTCGGAGGATTACGTGCATAGCCCAATGTTCAGCACAATGCCACCAGTGTCAGATAAGGTGCCGGAGGGTTTCGATTTGGGGGGTTCGTCTCATTTCTTCCGAGGCTGA	813	0.5314	MMNPFTSSSSKAKKKQTATTSTATAMTQEQKHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTSIISPDEQTQENHDFSSLFAPNSLTQQCDPSFQLAESNLPDGFLGIMDSNAWASPSSGAYAQHQVPTMDAHNVNHFQQLYDDSKTELPPLPPDITSSTGYEMGHGFYNNEFGYSEQSSGATYSYMDFDSEDYVHSPMFSTMPPVSDKVPEGFDLGGSSHFFRG	270

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g1643	270	FunFam	Ethylene-responsive transcription factor 2	39	97	-	-
	Glsi11g1643	270	Pfam	AP2 domain	40	88	IPR001471	GO:0003700\|GO:0006355
	Glsi11g1643	270	MobiDBLite	consensus disorder prediction	1	31	-	-
	Glsi11g1643	270	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	18	169	-	-
	Glsi11g1643	270	CDD	AP2	39	95	IPR001471	GO:0003700\|GO:0006355
	Glsi11g1643	270	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Glsi11g1643	270	Gene3D	AP2/ERF domain	38	97	IPR036955	GO:0003700\|GO:0006355
	Glsi11g1643	270	MobiDBLite	consensus disorder prediction	1	39	-	-
	Glsi11g1643	270	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Glsi11g1643	270	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Glsi11g1643	270	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Glsi11g1643	270	SUPERFAMILY	DNA-binding domain	39	97	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g1643	Glsi-ChrGlsi11	10284438	10285250	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g1643	24	264	AP2-EREBP Transcription Factor Family	AT5G13910	46.614	8.71e-57	179

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi11g1643		AP2	1.7e-13	CL0081