Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1637 ATGAGCTTTCAAGATATTCAAGGTGAGGCCCGGCGACCCGACGGCCGAATCAAGTCGCCGAGCCCCTCGCTGTCGCAGGCGGTAGCTGCCGGCATTTTCCAGACCAACACCGCCGTCGCTACTTTCCGACGACTCGTCGATGCCATTGGAACTATAAAAGACACTCCGGAGCACCGGCAGAAGCTGCACACTACGAGGCAGCGGGTATTGCAACTGGTGAAGGACACTTCTGCGAAGCTTAAGTCCTTGAGCGAAGCTGATCGCGATGCCGATGTCAATCCTAGTAAGAAAGTTGAAGATGCTAAGCTAGCGAGAGATTTTCAAACCACGTTGCAAGAGTTCCAGAAAGTACAACAGCTTGCTTCTGATCGCGACTTTGGCTCTGGTGAAGAATACGTTGACAATGATCTAGAAAAGCAACCTTTTATGAGAGAGCAAAAGAGGCAGGAGATACTCTTATTGGATAGTGAAATCGCCTTTCATGATGAAATGATTGAAGAAAGGGAAGGGGGCATTAGAGAGGTGGAAGAGCAAATTGGACAAACCAATGAAATATTCAAGGACTTGGCTGTTTTGGTTCATGAGCAGGGGGTAGTTATTGATGATATTCAATCAAATGTTGATGCTTCTGCTGGAGCAACAACCCAAGCTAGAACTCAGCTTGCCACGGCTTCCAGAAGTGTGAAATCCAAATCCACACGGTGTGAAAGTACAGACAAACTGTTTTGGAGTGTGGAGTCAGCTTCTCCTGTAATTGTTCAAGATCTCAAGAGCCCCTAG 780 0.4782 MSFQDIQGEARRPDGRIKSPSPSLSQAVAAGIFQTNTAVATFRRLVDAIGTIKDTPEHRQKLHTTRQRVLQLVKDTSAKLKSLSEADRDADVNPSKKVEDAKLARDFQTTLQEFQKVQQLASDRDFGSGEEYVDNDLEKQPFMREQKRQEILLLDSEIAFHDEMIEEREGGIREVEEQIGQTNEIFKDLAVLVHEQGVVIDDIQSNVDASAGATTQARTQLATASRSVKSKSTRCESTDKLFWSVESASPVIVQDLKSP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1637 259 Pfam Syntaxin-like protein 29 123 IPR006011 GO:0016020
Glsi11g1637 259 Gene3D - 163 225 - -
Glsi11g1637 259 Gene3D - 20 128 - -
Glsi11g1637 259 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 162 224 IPR000727 -
Glsi11g1637 259 MobiDBLite consensus disorder prediction 1 23 - -
Glsi11g1637 259 PANTHER SYNTAXIN 28 234 IPR045242 -
Glsi11g1637 259 SMART tSNARE_6 157 224 IPR000727 -
Glsi11g1637 259 CDD SNARE_Qa 165 221 - -
Glsi11g1637 259 SMART SynN_4 13 126 IPR006011 GO:0016020
Glsi11g1637 259 FunFam Syntaxin-22 like 19 129 - -
Glsi11g1637 259 SUPERFAMILY t-snare proteins 24 217 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1637 Glsi-ChrGlsi11 10242536 10245176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1637 1 233 SNARE and Associated Proteins AT5G46860 52.419 2.09e-81 244