Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1631 ATGGGTGACGCCGATGAGGATAACCCCTCCAAGAGTTCAATGCTGACAACTGATGGTGAAGTACCTACTGATGCAGGAAATGATGTCAAGTTGAATTCTAATTATCAAAGGGAAGCTAGACCAGGTGAGCCAAAGTGTGTTATATGTGGCCGCTATGGTGAGTATATATGTGATGAAACGGATGATGATGTTTGCAGCTTGGAATGTAAACAAGCAATACTACGCAGAACTGTCTACACCACATTGCCTGCTGGTACTCGTCTGTCTAAAAAGCTTGCCACAGCTGATGAGTGCTTTTATGTTAGAGATACTAATTATGAATCAGGTACTCCATCTTCAGCTGGAGATCAGGCTGATATGCTTAGAAAGAAACTTGACATTCATGTGAAGGGGGATGTAGTAGCACCAATTTTGTCATTCACTTCTTGTAACCTTCCTGATAAGCTCCTCCACAATATAGAAGCTGCAGGATATGACATGCCTACACCTGTCCAAATGCAAGCAATCCCAGATACTTTGATGGGCAAAAGCATGCTTGTATTGGCCGATACAGGATCTGGAAAGTCTGCTTCATTTTTAATTCCAATAGTTTCTCGTTGTGCAAGTCATCGCCTTGAGCATGTTTCTGATAAGAAGAAGCCACTAGCTATGGTGTTAACACCAACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGATTGCCTTTTAAAACTGCACTTGTGGTTGGTGGTGATGCAATGGCTGGACAACTCTACCGCATTCAGCAAGGAGTGGAGCTGATTGTGGGAACCCCAGGAAGGCTTGTTGATCTTTTGACAAAACATGAGATTGACTTGGATGAAATGATGACATTTGTCGTGGATGAGGTGGACTGCATGCTTCAAAGGGGTTTTCGAGATCAGGTCATGCAGATATATAGGGCTATTTCACAACCCCAGGTCTTGATGTATTCTGCTACAATTTCACGTGAGGTAGAGAAGATGGCTAACTCTCTGGCAAAAGATACTGTGGTTATATGTGTTGGTGAGCCTAATAGACCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCGAAGCAAAAGAAGCAGAAGCTGTTTGACATTTTGGCAAGTAAGCAGCATTTTAAGCCACCTGTCGTAGTATATGTGGGGTCCAGACTTGGGGCAGATCTCCTGTCCAATGCCATTACAGCCACCACTGGAATTAAAGCACTTTCAATTCACGGGGAGAAGTCTATGAAGGAAAGAAGAGAAATAATGAGGTCCTTTTTGGTGGGTGAGGTCCCAGTGGTCGTGGCAACTGGAGTTTTGGGTAGGGGGGTTGATCTATTGGGTGTAAGACAGGTAATTGTGTTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAAATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGCCATTGTTTTTGTGAATGAGGAGAACAAGAATGTCTTTGCAGAGTTGATTGAAGTTTTAAAGTCTGCTGGAGCAGCTGTGCCTCGAGAACTTGTCAACTCACGGTATACCAGGGGATTTTTCTTTCATGGCAAGGCTCCAAAAAAGAGGAAGAATAGATCTTGA 1617 0.4348 MGDADEDNPSKSSMLTTDGEVPTDAGNDVKLNSNYQREARPGEPKCVICGRYGEYICDETDDDVCSLECKQAILRRTVYTTLPAGTRLSKKLATADECFYVRDTNYESGTPSSAGDQADMLRKKLDIHVKGDVVAPILSFTSCNLPDKLLHNIEAAGYDMPTPVQMQAIPDTLMGKSMLVLADTGSGKSASFLIPIVSRCASHRLEHVSDKKKPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDEMMTFVVDEVDCMLQRGFRDQVMQIYRAISQPQVLMYSATISREVEKMANSLAKDTVVICVGEPNRPNKAVKQLAIWVESKQKKQKLFDILASKQHFKPPVVVYVGSRLGADLLSNAITATTGIKALSIHGEKSMKERREIMRSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNEENKNVFAELIEVLKSAGAAVPRELVNSRYTRGFFFHGKAPKKRKNRS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1631 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 519 IPR001650 -
Glsi11g1631 538 Gene3D - 26 80 - -
Glsi11g1631 538 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 138 166 IPR014014 GO:0003724
Glsi11g1631 538 SMART helicmild6 398 480 IPR001650 -
Glsi11g1631 538 CDD SF2_C_DEAD 357 489 - -
Glsi11g1631 538 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 131 516 - -
Glsi11g1631 538 MobiDBLite consensus disorder prediction 1 36 - -
Glsi11g1631 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 345 IPR014001 -
Glsi11g1631 538 Gene3D - 107 345 IPR027417 -
Glsi11g1631 538 SMART ultradead3 157 360 IPR014001 -
Glsi11g1631 538 Gene3D - 346 521 IPR027417 -
Glsi11g1631 538 Pfam DEAD/DEAH box helicase 162 333 IPR011545 GO:0003676|GO:0005524
Glsi11g1631 538 Pfam HIT zinc finger 44 70 IPR007529 -
Glsi11g1631 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 497 IPR027417 -
Glsi11g1631 538 Pfam Helicase conserved C-terminal domain 371 480 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1631 Glsi-ChrGlsi11 10199311 10201399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1631 132 500 Eukaryotic Initiation Factors Gene Family AT3G19760 28.075 5.55e-53 183