Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1616 ATGCAGGAAGCCAGGAACTTAACAATACATTCAGCAAAAATGAACGACCTTATGACCAAGTCTTTCACCAGCTATGTGGATCTGAAGAAAGCCGCCATGAAAGACGTGGATCTGGAAGCTGGTCTTCCTCATTCTGACGTAGAACTTAGCTCTTCAACAACCCACATGGATACTGACATGGGTCTCTTCCTAGAAGAAGCCGAGAAGGTGAAAACAGAGATGGGGTATCTCCGTGACATACTGGGCAGTCTTCAGCAAGCCAATGAAGAGAGCAAGTCCCTCCACAAGCCCGAGGCTCTGAAATCCTTAAGGAACAGGATCAATGCCGACATTGTCACCGTGCTCAAGAAGGCTAGAGCCATTCGGTCTCAGTTGGAAGAGATGGACCGTGCTAATGCCGCCAATAGGAGGCTATCTGGGCTCAAAGATGGCTCACCTGCCATTTACAGGACCAGAATTTCGGTTACCAATGGGCTGCGCAAGAAACTCAAGGAGCTTATGATGGAGTTTCAGGGACTGAGGCAGAGGATGATGACTGAGTACAAAGACACTGTAGGAAGACGCTATTTTACTGTCACTGGGGAACAGCCAGATGAAGAGGTCATTGAGAAGATCATCTCTAACGGGGATGAGGACTTCTTAAGCAAAGCTATACAGGAGCACGGGAGGGGAAAGGTGCTAGAGACGGTGGTCGAGATACAGGACAGGCACGATACTGCGAAAGAGATTGAAAAGAGCTTGCTGGAGCTGCACCAGGTGTTTCTGGATATGGCGGTAATGGTGGAAGCACAGGGCGAGAAGATGGACGACATTGAGCACCACGTGCTTCATGCTTCCCACTATGTCAAGGACGGGACTAAGAATCTGCAGACTGCAAAGAAATACCAGAAGAGCAGCAGAAAGTGGATGTGTATTGGACTGATACTTCTCCTCATTCTAATTCTCGTAATAGTCATTCCCATTGCCACCAGTTTCAGTAGTTCTTGA 987 0.4823 MQEARNLTIHSAKMNDLMTKSFTSYVDLKKAAMKDVDLEAGLPHSDVELSSSTTHMDTDMGLFLEEAEKVKTEMGYLRDILGSLQQANEESKSLHKPEALKSLRNRINADIVTVLKKARAIRSQLEEMDRANAANRRLSGLKDGSPAIYRTRISVTNGLRKKLKELMMEFQGLRQRMMTEYKDTVGRRYFTVTGEQPDEEVIEKIISNGDEDFLSKAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQKSSRKWMCIGLILLLILILVIVIPIATSFSSS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1616 328 Pfam SNARE domain 267 318 IPR000727 -
Glsi11g1616 328 FunFam Syntaxin 132 223 323 - -
Glsi11g1616 328 Pfam Syntaxin 63 265 IPR006011 GO:0016020
Glsi11g1616 328 CDD SynN 60 217 IPR006011 GO:0016020
Glsi11g1616 328 Coils Coil 156 176 - -
Glsi11g1616 328 SUPERFAMILY t-snare proteins 58 285 IPR010989 GO:0016020|GO:0016192
Glsi11g1616 328 ProSitePatterns Syntaxin / epimorphin family signature. 236 276 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi11g1616 328 CDD SNARE_syntaxin1-like 229 291 - -
Glsi11g1616 328 SMART SynN_4 55 182 IPR006011 GO:0016020
Glsi11g1616 328 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 230 292 IPR000727 -
Glsi11g1616 328 Gene3D - 60 188 - -
Glsi11g1616 328 PANTHER SYNTAXIN 72 315 IPR045242 -
Glsi11g1616 328 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 57 188 - -
Glsi11g1616 328 Gene3D - 226 326 - -
Glsi11g1616 328 SMART tSNARE_6 225 292 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1616 Glsi-ChrGlsi11 10115813 10116799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1616 14 328 SNARE and Associated Proteins AT1G08560 66.667 4.28e-139 394