Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1611 ATGAGAACCCCGCAATCCAATTTGCCTCCGGGGTTTAGGTTCCACCCAACAGACGGGGAGCTCATTCTTCACTATTTAAGGAAGAAGGTGGCCTCTGCACCCTTACCGGTTTCCATCATTGCAGACGTTGACATCTACAAGTTTGATCCTTGGGAATTACCAGCAAAGGCCGCCTTTGGGGATAAAGAATGGTACTTTTTCAGTCCCAGAGACCGCAAGTACCCAAATGGTGTGAGGCCAAACAGGGCAGCTGCTTCTGGGTATTGGAAGGCGACTGGTACTGATAAGACCATTGTGGCTTCGTTACCAGGAGGAGTCCCAGAGACCATGGGGGTGAAGAAGGCTCTGGTGTTCTACGGAGGAAGACCCCCAAAGGGTGTCAAGACTGACTGGATCATGCATGAATATCGCCTTGTAGACAGCAACAGATCCATTAAGCTCAAAGACGACTCCTCCATGAGGTTAGATGACTGGGTTCTGTGCCGGATATACAAAAAGTCCAAGTGTGCTTTATCTCCTACAGCAGAGGCAGAAGGGGTGGTAGGCGAGCAAGATCTTGCAGAAGAGAAGCTATCCCCTGTTCAGAACGCACCGATTTCTCAGAAATCTTCATCTTTCTCCAACCTGTTAGACGCCACGGACTACTCCATGTTGAGCAGCTTCTTATCTGAGGACCCTTCAAACCCACCTGGGTTTGGATCAAGTGCAGCTTTAAACTGTGGAAATCTGGATCAACGATCCTTCCCAAACAACATTAGCTCCCTGTTTTGGCAGAGCCCTCAATTGAACCCGTCAGTCCCAAACATAGAAAACAACATGTCGAAGCGTCATCTTTCAAGCGTGGCTGAGGATACGTTATACCCGTCGAAGAGGTACCCGAGTTCTTCTTGCAATTTGCCTAGCAGCAGCCGCCAATACGAGAACCCACAATGGAACATCCTCCTGAAGCAGTCGTTGTTGAACCAGCAGTTACTTCTGGGTCCTCATCTTCGCTTTCAGGGATAA 1005 0.4925 MRTPQSNLPPGFRFHPTDGELILHYLRKKVASAPLPVSIIADVDIYKFDPWELPAKAAFGDKEWYFFSPRDRKYPNGVRPNRAAASGYWKATGTDKTIVASLPGGVPETMGVKKALVFYGGRPPKGVKTDWIMHEYRLVDSNRSIKLKDDSSMRLDDWVLCRIYKKSKCALSPTAEAEGVVGEQDLAEEKLSPVQNAPISQKSSSFSNLLDATDYSMLSSFLSEDPSNPPGFGSSAALNCGNLDQRSFPNNISSLFWQSPQLNPSVPNIENNMSKRHLSSVAEDTLYPSKRYPSSSCNLPSSSRQYENPQWNILLKQSLLNQQLLLGPHLRFQG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1611 334 PANTHER NAC TRANSCRIPTION FACTOR 56 8 192 - -
Glsi11g1611 334 FunFam NAC transcription factor 56 17 171 - -
Glsi11g1611 334 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
Glsi11g1611 334 SUPERFAMILY NAC domain 4 166 IPR036093 GO:0003677|GO:0006355
Glsi11g1611 334 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Glsi11g1611 334 Gene3D NAC domain 17 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1611 Glsi-ChrGlsi11 10085438 10086648 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1611 2 334 NAC Transcription Factor Family AT3G04070 51.724 8.73e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi11g1611 NAM 4.9e-38 No_clan