Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1608 ATGGAAGAACCAGTTGTCGTGAACAAAGGAGAAGAACCTCTGGATTTGCCTCCGGGTTTTAGATTTCACCCCACGGATGAGGAGATCATTACTTATTATCTGACAGAGAAGGTGATGAATAGCAGTTTCAGTGCAACTGCTGTTGGAGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCCAAAAAAGCCAAGATGGGGGAGAAAGATTGGTACTTCTTCTTCCAAAGAGATAGGAAGTATCCAACAGGCACGAGAACAAATCGAGCTACCGAATCCGGATACTGGAAGGCCACCGGAAAAGATAAAGAGATTTACAAAGGGAAAGGCAACCTTGTGGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGGGCACCAAAAGGAGAGAAAACCAATTGGGTTATGCATGAGTTTAGATTGGAAGGCAAATTCGCAAGTTACAATCTCCCCAAGGCCGCAAAGGATGAATGGGTTGTCAGCAGGGTTTTCCACAAGAACACGGATGGTAAAAAGACCCCAGTTCCAGGCCTTTTGAGGATGAATTCTCTTGGTGATGATTTACTGGACTGTTCTTCACTCCCTCCTCTTATGGATCCTTCTTACAGCAATACCAACAAGCCTGGCTATAGTGACGATGACTTCAAGGGGACCAACCCATCACCACCGTCAGTTAAACCATCAGACGGCTATTATCTCCCTAACTTCTCCTTCCACAATCAGCAGCTGCTGATGAAGCCAGAAGACCACAGGACCTACGAGATGCCGGCTGCCAATAACTACATCGCCGATCAAGTGAAGTTCAGTAACCCAATGGCGAACTCACTTTCCCAATCTCAAATTCAAATCCAAAATCCTAGTTTCTCCTTCCAACAGAATGTGTCGTCAAACTATATGCACCAAGGTAGGAACAGTGCAGGTTTGGTGGGAAATGATCAGCAGGCTTTTCTAAGAGCATTTGCAGCCAATAATAATGATTGCATATCTGGAATGGACAAAGAGTGCAAGATGGAGCAGTTCTCGTCTAATAATCAGTCTGTGGTGAGTGTCTCGCAGGACACCGGCCTCAGCAACGACAGAAACACCGATACTTCCTCAGTTGTTTCGAAGCTCGACATGGGAAGGAATAGGGCGCTAATGTACGAGGACCTTGAGGGTCCATCAGTTGGACCCCTTTCAGATTTGGATAGCCTGTGGGATGACTACTGA 1212 0.4604 MEEPVVVNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVMNSSFSATAVGEADLNKCEPWDLPKKAKMGEKDWYFFFQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDGKKTPVPGLLRMNSLGDDLLDCSSLPPLMDPSYSNTNKPGYSDDDFKGTNPSPPSVKPSDGYYLPNFSFHNQQLLMKPEDHRTYEMPAANNYIADQVKFSNPMANSLSQSQIQIQNPSFSFQQNVSSNYMHQGRNSAGLVGNDQQAFLRAFAANNNDCISGMDKECKMEQFSSNNQSVVSVSQDTGLSNDRNTDTSSVVSKLDMGRNRALMYEDLEGPSVGPLSDLDSLWDDY 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1608 403 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Glsi11g1608 403 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 293 - -
Glsi11g1608 403 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Glsi11g1608 403 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Glsi11g1608 403 MobiDBLite consensus disorder prediction 201 226 - -
Glsi11g1608 403 FunFam NAC domain-containing protein 100-like 25 171 - -
Glsi11g1608 403 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Glsi11g1608 403 MobiDBLite consensus disorder prediction 201 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1608 Glsi-ChrGlsi11 10071270 10072814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1608 1 221 NAC Transcription Factor Family AT5G18270 72.727 1.83e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi11g1608 NAM 1.5e-38 No_clan