Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1598 ATGGCTTTTGGGATTTGTTCCAATGCATCTTTTGAGAGCTTTTTATCTGCCGACAAAAACCCGAGGGCCATAAAGGGAGCACCCAGCACGAAGCGTGACACCAAACTTGTTCCTTATACTTCATCTCATTTCCCTTCTATTTTTGACCTCATGGACACCGATGTATGCCGGAATGTATCAGTTTCCGACGACTGCCAGCAAGAGCAGCTCCTCTCCTCTTCCTGCTCAAAGCTTTCTCCCTTCTCAAACAGCCTTGACGACCTCTTCTCTTCTCAGAACACGGAAGTGGATGTTGGCTTAGAGTGGCTGTCAGTATTTGTGGAAGACTGCTTTTCCAGCCCAGCAAGCTGCCTCTTGGCACCTGCTCATGTTCAAACCACAAGCGCAAACGCTAAATCCTCGAGACAATTGGAGAAAACCCATCAAAACAAGTCTCCTCTACAAAATTTTGCTGTGCCTGGAAAGGCTAGAAGCAAAAGGAAAAGGCTGTCCACCCTTAGAAGCAAAGACCCTTTAAGCATCTGGGCGCGTTATTTAAACCCACAAAACGAACCCTTAAGTTCAGACCCTCCTCTTCTCAAACAAGCTTACTGGTTGGCTGACAGTGAACTCATTGTTCCTAAAAAGGAGGATGAGCGAGTAGTAAGGGAGGATGGAGCAGTAGAAGAGGGGGAGAAGGGGAGTGCGAGCAAGGAGAATTTCGGGAGCTGTGAGTCCGAGGAGGTTAGCCATGGGCAGCATCCGATGCCCAGAAGGTGCAGCCATTGCCTGGCACAGAAGACCCCACAGTGGAGGGCCGGTCCATTGGGCCCCAAAACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGTAGATTGCTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTAAGCTGCTTGCACTCCAATTCCCATAAAAAGGTCATGGAGATGCGAATGGCTCTTCCTTCGTCCGAGCCCTAG 972 0.4959 MAFGICSNASFESFLSADKNPRAIKGAPSTKRDTKLVPYTSSHFPSIFDLMDTDVCRNVSVSDDCQQEQLLSSSCSKLSPFSNSLDDLFSSQNTEVDVGLEWLSVFVEDCFSSPASCLLAPAHVQTTSANAKSSRQLEKTHQNKSPLQNFAVPGKARSKRKRLSTLRSKDPLSIWARYLNPQNEPLSSDPPLLKQAYWLADSELIVPKKEDERVVREDGAVEEGEKGSASKENFGSCESEEVSHGQHPMPRRCSHCLAQKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSCLHSNSHKKVMEMRMALPSSEP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1598 323 Gene3D - 243 313 IPR013088 GO:0006355|GO:0008270
Glsi11g1598 323 MobiDBLite consensus disorder prediction 130 149 - -
Glsi11g1598 323 PANTHER GATA TRANSCRIPTION FACTOR 64 317 - -
Glsi11g1598 323 FunFam GATA transcription factor 243 321 - -
Glsi11g1598 323 CDD ZnF_GATA 252 309 IPR000679 GO:0006355|GO:0043565
Glsi11g1598 323 MobiDBLite consensus disorder prediction 130 164 - -
Glsi11g1598 323 MobiDBLite consensus disorder prediction 215 235 - -
Glsi11g1598 323 ProSiteProfiles GATA-type zinc finger domain profile. 247 283 IPR000679 GO:0006355|GO:0043565
Glsi11g1598 323 Pfam GATA zinc finger 253 287 IPR000679 GO:0006355|GO:0043565
Glsi11g1598 323 SMART GATA_3 247 301 IPR000679 GO:0006355|GO:0043565
Glsi11g1598 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 248 311 - -
Glsi11g1598 323 ProSitePatterns GATA-type zinc finger domain. 253 278 IPR000679 GO:0006355|GO:0043565
Glsi11g1598 323 MobiDBLite consensus disorder prediction 215 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1598 Glsi-ChrGlsi11 10020768 10022374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1598 100 315 C2C2-Gata Transcription Factor Family AT4G32890 43.172 1.25e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi11g1598 GATA 1.6e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2161 12 36442282 36443421 Glsi11g1598 11 10020768 10022374 CCT