Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1591 ATGTCGTTTCGTCTGGTTTTCCCCCAACAAAAGGTTAACCCATATCTCCACCTAATACTTAGACTTCTTGACATCTTTAGGGCGACTCAAGTGGGCTATGATTTGAATGGGGAGAGGATGCCAGAGTTGAGAAGTGGAGCTAGAAGATCAAAGCGGCTTGGTGATCTTCAGCCTGCACCACAACCTATTGAACAAGGAGAGAATTGGGAACAACCTGCACCAAACAAAACCAGAAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGGAATGCCCCAGCTTTAGCAAAAAGGCCTTCACCAGCGGTACCCACTAGGCGAACTGCAGCTGGTAGAGGCCGGGGAGGTAGATTGATTGATTTTGTTCCTGAACCTGTTGCATTTGGGGCCCCAGATCAGGTTTACAATCGTGTAGAGGCAGCGGCCAATAATAATATTGTGATGGGGGGTGGAAGTGCAGACAAGGTGGCGGGAGCTGAAGAGGAAACAAGCACAACCCCTGTTCCTGAGACGGTACAAGTTGGTAATTCTCCTTTATATAAGATAGAAACAAAGTTGGGTAAGGGTGGTTTTGGCCAAGTCTATGTTGGCAGAAGGGTAAGTGGTGGTTCTGATCGGACAGGTCCTGATGCAATTGAGGTTGCACTGAAGTTTGAGCACAGAAATAGTAAAGGTTGTAATTATGGGCCTCCTTATGAGTGGCAAGTCTACAATACTCTGAATGGTTGTTATGGCATTCCTTGGGTTCATTACAAGGGTCGCCAAGGAGATTTCTACATTCTGGTAATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAGTCGATGCCGCCAAATATGGTTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCACATGAAAGGGTTTGTGCATGGAGATGTAAAACCAGAAAACTTTTTACTTGGTCAACCTGGAACAGCTGATGAGAAGAAGTTATATCTTATTGATCTTGGTTTGGCATCGAAATGGAAGGACACATCGTCCGGGCAACATGTTGAATATGATCAGAGGCCTGATATATTTAGGGGAACCATAAGGTATGCCAGTGTACATGCTCATTTAGGTAGGACTGGAAGTCGAAGGGATGATCTTGAGTCGCTGGCATACACATTAATATTTCTCATAAAAGGGAGGTTACCATGGCAGGGGTATCAGGGTGACAATAAAAGTTTTCTTGTATGTAAGAAAAAGATGGGAACTTCTCCAGAGTTGATGTCCTGCTTTTGTCCTGCTCCATTCAAGCAGTTCCTTGAAGCTGTTACTAACATGAGATTTGATGAGGAGCCTAATTATTCCAAGCTTATATCATTTTTTGATAGCTTGATTGAACCATGTGTACCATTGAGACCAATAAGAATCGATGGAGCTTTAAAGGTTGGTCAAAAGCGGGCTAGAATGCTTATAAATCTTGAAGAAGATGAGCAGCCAAAGAAGAAAGTGCGACTGGGAAATCCTGCTACTCAATGGATATCAGTGTATAATGCACGACGTCCCATGAAGCAGAGATATCACTATAATGTAGCAGACACTAGGCTCCGACAGCATGTGGACAAGGGTAATGAGGATGGGTTATATATCAGCTGTGTAGCCTCTTCAGCAAATCTATGGGCTTTAATCATGGATGCAGGAACTGGTTTTTCCTCCCAGGTCTATGAGTTGTCAGCAGTCTTCCTGCATAAGGATTGGATTATGGAACAATGGGAGAAAAATTACTACATTAGTTCGATAGCTGGTTCAGTAAATGGGAGTTCCTTGGTTGTTATGTCCAAAGGAACTCCTTACACACAGCAGTCCTACAAAGTGAGTGATTCGTTTCCTTTTAAGTGGATAAATAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACTACTGCTGGCAGTCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTATATCCAAGTGAAGGTATTCATCGGCGATGGGAGAGTGGTTACCGGATAACATCTATGGCTGCTACTGCTGATCAGGCAGCCTTCATATTGAGTGTACCAAAACGCAAACTGCTTGATGAAACTCAAGAGACTCTGCGTACCTCTGCCTTCCCTAGCACCCATGTAAAGGAAAAATGGTCCAAAAATCTCTATATCGCCTCAATATGTTATGGGCGGACTGTGTGCTAG 2223 0.4435 MSFRLVFPQQKVNPYLHLILRLLDIFRATQVGYDLNGERMPELRSGARRSKRLGDLQPAPQPIEQGENWEQPAPNKTRRRVGGGRGRGGNAPALAKRPSPAVPTRRTAAGRGRGGRLIDFVPEPVAFGAPDQVYNRVEAAANNNIVMGGGSADKVAGAEEETSTTPVPETVQVGNSPLYKIETKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMPPNMVACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTADEKKLYLIDLGLASKWKDTSSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMGTSPELMSCFCPAPFKQFLEAVTNMRFDEEPNYSKLISFFDSLIEPCVPLRPIRIDGALKVGQKRARMLINLEEDEQPKKKVRLGNPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGNEDGLYISCVASSANLWALIMDAGTGFSSQVYELSAVFLHKDWIMEQWEKNYYISSIAGSVNGSSLVVMSKGTPYTQQSYKVSDSFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGYRITSMAATADQAAFILSVPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1591 740 FunFam Casein kinase 1-like protein 151 499 - -
Glsi11g1591 740 ProSitePatterns Protein kinases ATP-binding region signature. 185 216 IPR017441 GO:0005524
Glsi11g1591 740 ProSiteProfiles Protein kinase domain profile. 179 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1591 740 Gene3D Transferase(Phosphotransferase) domain 1 147 497 - -
Glsi11g1591 740 SUPERFAMILY Protein kinase-like (PK-like) 179 460 IPR011009 -
Glsi11g1591 740 PANTHER CASEIN KINASE-RELATED 180 708 - -
Glsi11g1591 740 MobiDBLite consensus disorder prediction 42 115 - -
Glsi11g1591 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Glsi11g1591 740 Pfam Protein kinase domain 179 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1591 740 CDD STKc_CK1 179 453 - -
Glsi11g1591 740 SMART serkin_6 179 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1591 Glsi-ChrGlsi11 9956475 9963752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1591 254 450 MAP Kinase Kinase Kinase Kinase AT1G53165 24.747 4.41e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Glsi11g1591 Pkinase 9.8e-16 CL0016