Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1579 ATGGCCATGGAGTGTAAGCAAACCAAAAGGAAACAAAAGATGGAGATAAAGAAGACAGAGGATGAACGTGATCGCTCTATCTGTTTCTCCAAACGTAGATCTGGAATTGACAGAATGGCTAATGAACTTGTTACTCTCCAAACGAGAAGTAGGATGAATTGGTGGCTCAAGTTGAGGCTGAGAAAGATCGAGGAAAGGCACTGCAGAAACAAAAGGCAAAGAACTAATGGCTCTTGTTCTATGGCAGCCTCTTTCATCATGAACTCATTTTTGAAGACTGAAACAGGGAATCCATTTGGTGGTGGGTTTCGGGAACTGATAATGGATTTGGCAGCGGAGAAGAGAGAATTAGAGATCAACGACAAAGCTTCCACTGCTAACACTAACAACATTAACACCGAAAATCACCAGGAAATAGTAGATTCTTCGTCTACATTGCCGTCCTATGGTAAAGAAGCTGAAGAACGACAGGCTCGTGACCTCAAAGCTGGCCTTCATCCCCTAAAGCACAAATTTGTACTTCGGTACACACGTCGAACACCTGGAGTTCGAAATCAGACATCATATGAGGACAACATAAAGAAAATTATTGACTTTAGTACGGTAGAAGGTTTTTGGGTCTGCTATTGCCATCTTGGTCACCCTTCTTCCTTGCCAAGTCCAACAGATTTGCACCTTTTTAAGGAAGGAATCTGCCCTCTGTGGGAGGACTCTGCTAATTGCAATGGTGGTAAGTGGATCATACGATTTAAAAAGGTTGTCTCGGGTCGTTTTTGGGAGGACCTGGTTCTTGCTTTAGTGGGTGACCAGCTGGACTATGGAGATAACATATGTGGTGCAGTACTGGGCATTCGTTTCAATGAGGATATATTGAGTGTGTGGAATCGCAATGCATCTGATCATCAGGCTGTGATGGCTCTGAGAGATTCAATTAAACGTCACTTAAAGCTTCCCCATAGCTATGTCATGGAGTACAAGCCCCATGATGCCTCTCTGCATGACAATTCATCGTACAGAAACACTTGGTTGAGAGGGTAG 1038 0.4364 MAMECKQTKRKQKMEIKKTEDERDRSICFSKRRSGIDRMANELVTLQTRSRMNWWLKLRLRKIEERHCRNKRQRTNGSCSMAASFIMNSFLKTETGNPFGGGFRELIMDLAAEKRELEINDKASTANTNNINTENHQEIVDSSSTLPSYGKEAEERQARDLKAGLHPLKHKFVLRYTRRTPGVRNQTSYEDNIKKIIDFSTVEGFWVCYCHLGHPSSLPSPTDLHLFKEGICPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLGIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLHDNSSYRNTWLRG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1579 345 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 46 IPR002100 GO:0003677|GO:0046983
Glsi11g1579 345 SUPERFAMILY SRF-like 11 67 IPR036879 GO:0003677|GO:0046983
Glsi11g1579 345 ProSitePatterns Eukaryotic initiation factor 4E signature. 223 246 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Glsi11g1579 345 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Glsi11g1579 345 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Glsi11g1579 345 ProSiteProfiles MADS-box domain profile. 9 46 IPR002100 GO:0003677|GO:0046983
Glsi11g1579 345 MobiDBLite consensus disorder prediction 126 153 - -
Glsi11g1579 345 Pfam Eukaryotic initiation factor 4E 167 325 IPR001040 GO:0003723|GO:0003743|GO:0006413
Glsi11g1579 345 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 126 334 IPR001040 GO:0003723|GO:0003743|GO:0006413
Glsi11g1579 345 MobiDBLite consensus disorder prediction 126 150 - -
Glsi11g1579 345 Gene3D RNA Cap, Translation Initiation Factor Eif4e 127 340 IPR023398 -
Glsi11g1579 345 SUPERFAMILY eIF4e-like 156 341 IPR023398 -
Glsi11g1579 345 Coils Coil 2 22 - -
Glsi11g1579 345 FunFam Eukaryotic translation initiation factor NCBP 138 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1579 Glsi-ChrGlsi11 9904298 9908694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1579 113 345 Eukaryotic Initiation Factors Gene Family AT5G18110 71.245 9.95e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi11g1579 IF4E 6.4e-51 CL0625