Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1577 ATGGAAATTCCCTTCCAGCAATCAAAGCAGTATCAGAAAGCAGTCATTCCAAATAGTAAAGGAAAATTCAAAGGAAGGAACAGAAACATCAGCACAAACAAATTTGTTGGAGTGAGACAAAGACCTTCTGGGAGATGGGTGGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGCACATTCGAGACTGCAGAGGAGGCAGCCAGAGCTTATGATGAAGCTGCTTGCCTTCTTCGCGGATCCAATACTCGCACCAACTTCATTACTCGTGTCTCCTTGGATTCTCCTCTTGCTTCTCGAATTCGAAATCTGCTTAACAACAGAAAAGGAACCAAACAACAAGATGTTGAAGCCTCTGCCTCTAGTGTCAATATAACTAGCAGTGCTAGCACTAGTAGTAATTCAAGCAATAAGGACAACAATGACAAGTCTCTTTCTAGTGGGACAGTTCAGAACACACAACTGTTTGATGATGCATATAGACCAGATTTGACCAATTGCAGGGAGGAATTTGAGTTGGGCCCCCAATCCAATCTCTCATGGGGTGGTGGACCTGTTAATGATGGTTTTCCTTTTGCTCAAGTATTGGACATACCAAAGTCTGATGATCTGTCTGATACAGCTGAGTTAGAGCTTTCAGAATTTGAAAGGATCAAATTTGAAAGACAGATATCAGCTTCACTTTATGCAATTAATGGAGTGCATGAGTACATGGAAACTGTCATGGACTCTAATGAAGCTCTTTGGGATCTTCCACCTTCATGA 774 0.4212 MEIPFQQSKQYQKAVIPNSKGKFKGRNRNISTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITRVSLDSPLASRIRNLLNNRKGTKQQDVEASASSVNITSSASTSSNSSNKDNNDKSLSSGTVQNTQLFDDAYRPDLTNCREEFELGPQSNLSWGGGPVNDGFPFAQVLDIPKSDDLSDTAELELSEFERIKFERQISASLYAINGVHEYMETVMDSNEALWDLPPS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1577 257 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Glsi11g1577 257 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Glsi11g1577 257 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 227 - -
Glsi11g1577 257 MobiDBLite consensus disorder prediction 109 155 - -
Glsi11g1577 257 FunFam ethylene-responsive transcription factor RAP2-11 33 92 - -
Glsi11g1577 257 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Glsi11g1577 257 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Glsi11g1577 257 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Glsi11g1577 257 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Glsi11g1577 257 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Glsi11g1577 257 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1577 Glsi-ChrGlsi11 9897324 9898097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1577 34 255 AP2-EREBP Transcription Factor Family AT5G19790 45.106 2.80e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g1577 AP2 5.4e-14 CL0081