Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1573 ATGAACGATCTTCTAACGGAATCATTTGAGATCCCACGTGGGCAAGGTAATGGAGGTCGAGATATTGAGTTAGGAGCATATGCATTGAATTCAGGAGAACTGGGATTGGATAATTTCTTCAAGAAGGTTCAAGATCTTGATAAACAATTTGTGAAGCTGGATAAGCTTCTGAGAAAGCTCCAGGATGCCCACGAGGAGTCCAAAGCTGTGACCAAAGCTCCTGCCATGAAAGCTATTAAGCAGAAAATGGAGAAAGATGTCGATGAAGTTAAGAAAATTTCTCATTTCGTAAAGACAAAAATTGAAGAACTGGACAAAGAAAACTTGGCAAATAGGCAGAAGCCTGGGTGTGGAAAAGGATCAGGTGTTGACAGGTCAAGAACAGCAACCACCATTGCCTTAAAGAAGAAACTGAAGGACAAGATGGCTGAATTTCAGGTCCTACGGGAAGCCATCCATCAAGAATATCGTGAGGTCGTTGAGAGACGTGTTTTTACAGTGACGGGCACTAGGGCTGATGAGGAGACAATTGACAGATTAATTGAGAGTGGAGATAGTGAACAAATCTTCCAGAAGGCAATTCAAGAACAGGGACGAGGCCAGATAATGGACACCCTGGCAGAAATTCAAGAGCGGCATGAGGCAGTTAGAGAAGTTGAAAGGAAGCTTCTTGATTTACAACAGATATATTTGGATTTGGCGGTGTTAGTTGATGCACAGGGCGACATTCTTAACAACATAGAATCCCAGGTGTCAAGTGCCGTAGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAAGCCAAGAAGCTACAGAAGAATTCAAGAAAATGGATGTGCATTGCAATAATGATACTCCTTATCGTTGTTATAATCATCGTTGTTGCTGTTATCAAACCATGGGGTGACAAAAAGGGTGTTTAG 924 0.4264 MNDLLTESFEIPRGQGNGGRDIELGAYALNSGELGLDNFFKKVQDLDKQFVKLDKLLRKLQDAHEESKAVTKAPAMKAIKQKMEKDVDEVKKISHFVKTKIEELDKENLANRQKPGCGKGSGVDRSRTATTIALKKKLKDKMAEFQVLREAIHQEYREVVERRVFTVTGTRADEETIDRLIESGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVREVERKLLDLQQIYLDLAVLVDAQGDILNNIESQVSSAVDHVQQGNNALQKAKKLQKNSRKWMCIAIMILLIVVIIIVVAVIKPWGDKKGV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1573 307 FunFam Syntaxin 132 199 299 - -
Glsi11g1573 307 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Glsi11g1573 307 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Glsi11g1573 307 CDD SynN 36 193 IPR006011 GO:0016020
Glsi11g1573 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Glsi11g1573 307 Coils Coil 43 73 - -
Glsi11g1573 307 CDD SNARE_syntaxin1-like 205 267 - -
Glsi11g1573 307 Coils Coil 135 155 - -
Glsi11g1573 307 SMART SynN_4 31 157 IPR006011 GO:0016020
Glsi11g1573 307 PANTHER SYNTAXIN 47 293 IPR045242 -
Glsi11g1573 307 Pfam SNARE domain 243 294 IPR000727 -
Glsi11g1573 307 FunFam Syntaxin 132 31 160 - -
Glsi11g1573 307 SMART tSNARE_6 201 268 IPR000727 -
Glsi11g1573 307 Gene3D - 33 160 - -
Glsi11g1573 307 Gene3D - 197 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1573 Glsi-ChrGlsi11 9870239 9876581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1573 1 307 SNARE and Associated Proteins AT3G03800 73.290 1.67e-156 437