Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1552 ATGAAGGATTTGACTACCAAAAAACCATTTGACATATCTCTTGGAAACCTTGTAGAAAGTTGGAACCTTGTGTTTTGGCATCCATTATTATGTGCCTTTCCGCCTTCAAATCATTCTTTGCATGATTTACTGGTTTTATTTAGCTTTCATCATGAGAACACTTCTTATGTTCCCTATATTCATGCTTCACTTTTTCTTGGCATGTTTTCCATTATGAAAATGTTTACTCATGCAGCAGAATCTACAGATCTCAAGAAAGATTTCATGTACACATCTAAGAAGTTCGAGAGGATGTTGTGGGTAGACAAGTATCGACCCAAAACGCTAGACCAGATTATGGTCCACCAAGAGGTCGCCCAAAATCTTAAGAAATTGGTGACGGAGCAGGATTGCCCGCATTTGCTCTTCTATGGCCCGCCTGGGTCTGGTAAGAAAACCCTCATCATGGCTCTTCTCCGACAAATGTTCGGAACCAGTGCCGAGAAGGTGAAGGTGGAAAATAGGACATGGAAAGTGGATGCTGGGAGTAGATCTATAGATATAGAGCTGACGACATTATCGAGTGCCAATCACATAGAACTGAGTCCCAGTGATGCAGGCTTTCAGGACAGATATGTTGTTCAAGAAATAATTAAAGAAATGGCTAAAAATAGACCAATTGATACTAAGGGGAAGAAAGGATTTAAAGTACTAGTGCTCAATGAGGTTGACAAACTCTCTAGAGAAGCCCAGCATTCTCTGCGCAGAACGATGGAAAAATACAGTGCTTATTGCAGGTTAATACTATGCTGCAATAGTTCTTCAAGAGTCACAGAAGCAATCCGCTCTCGCTGTCTAAATGTGCGAATAAATGCACCAAGTGAAGAACAGATTGTTAGAGCATTGGAGTTCATTGGTAAGAAAGAAGGACTGCAACTTCCTTCTGGTTTTGCTACCCGCATAGCAGAGAAATCAAATCGGAATCTAAGGAGAGCTATATTGTCTTTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACTAGCAAACAAAATATACCTCCAATGGATTGGGAGGAATATGTTTCCGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGATTGTTTCAAGTTCGAGGGAAGTTGTATGAACTGCTAATCAATTGTATTCCCCCAGAGATCATCTTGAAGAGGCTTCTATATGAACTGTTGAGGAAACTGGATGCAGAATTAAAGCTTGAGGTCTGCCATTGGGCTGCATATTATGAACATAGGATGCGTCTTGGACAGAAGGCCATCTTCCACATCGAAGCGTTTGTGGCTAAATTCATGAGCATTTATAAAGCCTTCCTCATTGCAACATTTGGCTGA 1356 0.4093 MKDLTTKKPFDISLGNLVESWNLVFWHPLLCAFPPSNHSLHDLLVLFSFHHENTSYVPYIHASLFLGMFSIMKMFTHAAESTDLKKDFMYTSKKFERMLWVDKYRPKTLDQIMVHQEVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQMFGTSAEKVKVENRTWKVDAGSRSIDIELTTLSSANHIELSPSDAGFQDRYVVQEIIKEMAKNRPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVRALEFIGKKEGLQLPSGFATRIAEKSNRNLRRAILSFETCRVQQYPFTSKQNIPPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1552 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 334 IPR027417 -
Glsi11g1552 451 SMART AAA_5 130 289 IPR003593 GO:0016887
Glsi11g1552 451 CDD HLD_clamp_RFC 286 354 - -
Glsi11g1552 451 Pfam DNA polymerase III, delta subunit 115 285 - -
Glsi11g1552 451 Gene3D - 349 442 - -
Glsi11g1552 451 FunFam Replication factor C subunit 3 349 442 - -
Glsi11g1552 451 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 100 439 - -
Glsi11g1552 451 FunFam Replication factor C subunit 5 97 286 - -
Glsi11g1552 451 SUPERFAMILY post-AAA+ oligomerization domain-like 348 443 IPR008921 GO:0003677|GO:0006260
Glsi11g1552 451 Gene3D - 98 286 IPR027417 -
Glsi11g1552 451 CDD AAA 116 287 - -
Glsi11g1552 451 Gene3D - 287 345 - -
Glsi11g1552 451 FunFam replication factor C subunit 3 287 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1552 Glsi-ChrGlsi11 9719134 9724735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1552 98 451 Core DNA Replication Machinery Family AT5G27740 84.746 0.0 652