Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1543 ATGGTATGCTTTGCACACCTGTACGAAGAACTTTCCCGTTCAATTGCGGCAGCGAGTTTCCCGACCTTCCCTTTGTCGCTGCCAATAATGGCTGAACGTGGTGGTGGAGACCGTGGTGGGTTTGGCCGAGGCTTTGGTGGCCGTGGTGGACGCGGTGACCGTGGCCGTGGAGGCCGCCGCAGAGGGGCTCGTCGTGAAGAGGAGGAGAAGTGGGTTCCCGTGACCAAGCTTGGCCGTCTTGTCAAAGAGGGAAGGATCCGCAGCCTCGAGCAGATCTACCTCCACTCTCTACCAATCAAGGAACACCAGATCGTCGACACCTTGGTTGGCCCCAGCCTCAAGGACGAGGTCATGAAGATTATGCCGGTCCAGAAGCAGACCCGGGCCGGTCAGAGGACCCGGTTTAAGGCATTCGTTGTCGTCGGTGACTGCAATGGACATGTAGGACTCGGGGTGAAGTGTAGCAAGGAGGTCGCCACGGCCATTCGTGGGGCTATTATATTGGCGAAGCTTTCGGTTATTCCTGTGAGAAGAGGTTACTGGGGTAACAAGATCGGGAAGCCCCACACCGTTCCCTGCAAAGTTACTGGAAAGTGTGGTTCAGTCACAGTGCGGATGGTTCCTGCCCCTCGTGGTGCCGGAATCGTTGCCGCTAGGGTGCCGAAGAAGGTATTGCAGTTTGCAGGAATTGAAGATGTCTTCACATCTTCTCGAGGGTCGACTAAGACTCTTGGAAATTTCGTCAAGGCAACTTTTGATTGTTTAATGAAAAGCTATGGATTCCTAACGCCTGAATTCTGGAGGGAGACCCGTTTTACCAAATCTCCATTCCAAGAGTACACAGATCTATTGGCAAAGCCAACAGGAAAGGCCCTTATCCTGGAGGAGGACAGGGTGGATGCTTGA 906 0.5408 MVCFAHLYEELSRSIAAASFPTFPLSLPIMAERGGGDRGGFGRGFGGRGGRGDRGRGGRRRGARREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDCNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKSYGFLTPEFWRETRFTKSPFQEYTDLLAKPTGKALILEEDRVDA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1543 301 FunFam 40S ribosomal protein S2 176 269 - -
Glsi11g1543 301 PANTHER RIBOSOMAL S SUBUNIT 58 257 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi11g1543 301 FunFam 40S ribosomal protein S2 70 175 - -
Glsi11g1543 301 Gene3D - 176 268 IPR014721 -
Glsi11g1543 301 Pfam Ribosomal protein S5, C-terminal domain 197 268 IPR005324 GO:0003735|GO:0005840|GO:0006412
Glsi11g1543 301 Gene3D - 70 175 - -
Glsi11g1543 301 NCBIfam 30S ribosomal protein S5 66 273 IPR005711 GO:0003735|GO:0006412|GO:0015935
Glsi11g1543 301 ProSiteProfiles S5 double stranded RNA-binding domain profile. 113 176 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi11g1543 301 Pfam Ribosomal protein S5, N-terminal domain 113 177 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi11g1543 301 SUPERFAMILY dsRNA-binding domain-like 109 178 - -
Glsi11g1543 301 SUPERFAMILY Ribosomal protein S5 domain 2-like 189 269 IPR020568 -
Glsi11g1543 301 ProSitePatterns Ribosomal protein S5 signature. 130 162 IPR018192 -
Glsi11g1543 301 MobiDBLite consensus disorder prediction 38 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1543 Glsi-ChrGlsi11 9665925 9668189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1543 67 289 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 89.238 5.90e-150 419