Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1539 ATGAGCGGTGAAGGAGACATGTCTGAGAATTATGGTGCTATCAAATTATTTGGCTTTAAGATTCCTTTGCAGCAACCTCAGATTCCGGTAAGCTCTCCAATGGCTTCTCAGATTCCAGACAACCATTTCAGCTCCGTGCTTTTGGTTTTCATTTCCCATTCAAAGGAAAGTAATGATGTTTGCCGTCAAGTGGAAAGACTTTGTCCTCAAAAATCTGTGCAACAAGAGAACTCCTCTGATTCAACTGCTAGGAAACCTAATCACCAAGAAAATGAGCCAAAACAAGATCCGGAGACGGTGGAAGATAAGATTAAAATATTTAAGAAACCAGACAAAATTATTCAGTGTCCACGATGCGACAGTACGGAGACAAAGTTCTGTTATTTTAATAACCACAATGCTAATCAACCTCGGCATTTCTGCAAAAAGTGCCAAAGGTATTGGACCGCTGGTGGATTATTGAGAAATGTTCCTGTGGGTTCTGGGAAACGGAAGAAAAAACAAGTAGCCTCCCTATTTCACCACCCTATAGTAACCTCTGATGAAATTTCAACCCCCACGTTACAAACCATATACTCATCTGGTTACCAATTTCTCTCTAATCCTGAAACCTCAGCTTTTTACTGGTCTTCAAAGGATCATTGTATTTTATTGAAATACATGCACACAGTGCTTAATCTTAGAGACCAGAAAACAAGTGCCGAAGGGAGTTCAATTAATCGTGTTTCCAATGAGCTGAGTCCTTCAAACCCTGTTCTTGCATGGCTCTTTCCTTGGAATCCACATTTGAAATATGTTGTTTCCATGTGTAACCCAAATAGCAATTTTTACACACCCCCGCAGAGCTATGATCCCACACCGCTTGTGGCATTTCCAGGCAGTTGCCCACCAAGTATTCCTTCACAACTTGCATTATCATCCCACTGGGGTGGTACACTTGCAAGGGCTGCCGGAACAGAGAGTGTTTCAATAGGATCCAATGGTTGCCTTTGGCGGTCATCATCTACAAGTAATTGCTGCTGCTCAGGCGATGCCTCCCAAACTCTGGGCAAACACTTCAGAGATACATTGTTCACAGATGAAGACAAGTCGGGCAAGTGTATTTTGGTTCCAAAGACACTTAGAATTGATGACCCAAATGAGGCCTACATTAGAAGAAGTAACAAAACAACTAAAATGAAGACACTGTTCCTGATCTGCTTCTGTCTACTTCCCCTTGCATTTGGTGACCTGCAGGTTGGGTTCTACAGCTCCACCTGCCCAACAGCAGAGTCCATTGTAAAACAAGTGGTGCAGACGCGATTCAACCGCGATAAGTCCATAACTGCAGCCTTGCTTCGCATGCATTTTCATGACTGTTTTGTCAGAGGTTGCGATGCATCCATACTTATAGACTCCACTGGGAATACATCCTCAGAAAAAGATACGGGTGCAAATGATAGCGTCCGAGGATACGATCTGATTGATGAGGTCAAGGAAAGACTTGAAGCTGCATGTCCTTCAACTGTATCCTGTGCAGATATCATAGCACTTGCCTCTAGAGATGCTGTGGCTTTTGGTGGAGGACCCAAATACGAGGTTCCTACTGGTAGACGTGATGGGCTAGTCTCTGATGCTAGTGAAGTCAATTTGCCAGGACCTGGAATATCTGTTTCTGCAGCATCACAATTTTTTGTAGCTAAGGGAATCACAACAGAAGAAATGGTGACCCTTTTGGGTGCACATACAGTTGGTGTTGCACACTGCGGTTTCTTCTCAAATAGACTAAGGGGGGAATCTGATTCTACAATGGACCCTGTGTTAAAAGCTAAGCTGGTCAAGTTATGTGACTCTACAGGGAGGGAAGACCCAGCTGCATTTTTGGACCAAAAGACATTTTTCCTAGTCGATAACGAGTTTTATAAGCAGATCCTTCTGAAGAGAGGCGTACTGGAGATTGATCAGCAACTAGCTTTGGACAAATCCACAAGTGGTTTCGTCTCTAGTTTTGCATCAAATAGTGACAAGTTCGAAAAGAGTTTTGCAAATGCAATGATAAAGATGGGGAGTATTGAAGTTCTGGTTGGAAACGCTGGAGAAGTTCGGAAGAATTGCAGGGTTTTTAATAAACGCAATTAG 2118 0.4301 MSGEGDMSENYGAIKLFGFKIPLQQPQIPVSSPMASQIPDNHFSSVLLVFISHSKESNDVCRQVERLCPQKSVQQENSSDSTARKPNHQENEPKQDPETVEDKIKIFKKPDKIIQCPRCDSTETKFCYFNNHNANQPRHFCKKCQRYWTAGGLLRNVPVGSGKRKKKQVASLFHHPIVTSDEISTPTLQTIYSSGYQFLSNPETSAFYWSSKDHCILLKYMHTVLNLRDQKTSAEGSSINRVSNELSPSNPVLAWLFPWNPHLKYVVSMCNPNSNFYTPPQSYDPTPLVAFPGSCPPSIPSQLALSSHWGGTLARAAGTESVSIGSNGCLWRSSSTSNCCCSGDASQTLGKHFRDTLFTDEDKSGKCILVPKTLRIDDPNEAYIRRSNKTTKMKTLFLICFCLLPLAFGDLQVGFYSSTCPTAESIVKQVVQTRFNRDKSITAALLRMHFHDCFVRGCDASILIDSTGNTSSEKDTGANDSVRGYDLIDEVKERLEAACPSTVSCADIIALASRDAVAFGGGPKYEVPTGRRDGLVSDASEVNLPGPGISVSAASQFFVAKGITTEEMVTLLGAHTVGVAHCGFFSNRLRGESDSTMDPVLKAKLVKLCDSTGREDPAAFLDQKTFFLVDNEFYKQILLKRGVLEIDQQLALDKSTSGFVSSFASNSDKFEKSFANAMIKMGSIEVLVGNAGEVRKNCRVFNKRN 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1539 705 FunFam Peroxidase 414 561 - -
Glsi11g1539 705 PRINTS Plant peroxidase signature 636 653 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Plant peroxidase signature 444 464 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Plant peroxidase signature 521 536 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Plant peroxidase signature 676 689 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Plant peroxidase signature 502 512 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Plant peroxidase signature 483 496 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Plant peroxidase signature 566 578 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Plant peroxidase signature 420 439 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Plant peroxidase signature 620 635 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 Pfam Dof domain, zinc finger 111 168 IPR003851 GO:0003677|GO:0006355
Glsi11g1539 705 Gene3D Peroxidase, domain 2 545 681 - -
Glsi11g1539 705 ProSiteProfiles Zinc finger Dof-type profile. 114 168 IPR003851 GO:0003677|GO:0006355
Glsi11g1539 705 MobiDBLite consensus disorder prediction 71 101 - -
Glsi11g1539 705 ProSitePatterns Peroxidases proximal heme-ligand signature. 567 577 IPR019793 -
Glsi11g1539 705 PRINTS Haem peroxidase superfamily signature 567 582 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Haem peroxidase superfamily signature 442 456 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Haem peroxidase superfamily signature 622 637 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Haem peroxidase superfamily signature 521 533 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 PRINTS Haem peroxidase superfamily signature 503 520 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 Pfam Peroxidase 427 666 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 CDD secretory_peroxidase 411 701 IPR033905 GO:0004601|GO:0042744
Glsi11g1539 705 PANTHER PEROXIDASE 25-RELATED 399 690 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 Gene3D - 414 702 - -
Glsi11g1539 705 FunFam Peroxidase 545 681 - -
Glsi11g1539 705 MobiDBLite consensus disorder prediction 83 101 - -
Glsi11g1539 705 ProSitePatterns Peroxidases active site signature. 442 453 IPR019794 GO:0004601
Glsi11g1539 705 SUPERFAMILY Heme-dependent peroxidases 410 702 IPR010255 GO:0004601|GO:0006979|GO:0020037
Glsi11g1539 705 ProSitePatterns Zinc finger Dof-type signature. 116 152 IPR003851 GO:0003677|GO:0006355
Glsi11g1539 705 ProSiteProfiles Plant heme peroxidase family profile. 410 702 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1539 Glsi-ChrGlsi11 9634587 9640305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1539 386 702 Peroxidase AT4G26010 58.385 1.08e-126 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi11g1539 peroxidase 2e-71 CL0617