Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1536 ATGTTCAAACCCAAGAAAAGAAAAGAAATTGATCAGAAATTTCTTAAGCACGTGCTATGTTTTAATGAGAAGACAGAATTTGAGTTCCATAGAGTGAAAGCGAGTGCAGGGATATGTATCAGAAATTTTGTCTTGCTTTTACATTATGGGATTGGAAATTCCATATTGGGAACAAAGAGTACCAACGATGAAGGTGATGGGTATTTTGGGGTTGAGAACAAGAGCTTGGCTTTCAACCTTGGTGAGGAAGTAGAAGTTAAGAGTTCTGCTGCCGACAGAAATGGGCGAACTAGGCTCACTCGAGGCCACTGGAGGCCAGCTGAAGATAACAAACTCAAAGAGCTTGTAACTCAGTATGGTCCTCAAAACTGGAACTTGATCGCTAGTCATCTCGAGGGAAGATCAGGCAAAAGCTGCAGACTGAGGTGGTTCAATCAGCTAGATCCTAAAATAAACAGGAGGGCATTCTCCGAAGAAGAGGAGGAGAGGCTGCTATTTGCTCATAAAGAGTACGGCAACAAATGGTCTATGATTGCTACACTGTTTCCTGGGAGGACAGATAATGCTGTGAAGAACCACTATCACGTGATCATGGCTAGGAAGCAGAGAGATTTGTCAAATGCTTTCAGGAGGAGAAGGCCTACTTCTGAAACCTTTGCAAAGGGTTTAAATTTGACTTTATCAAATAATGCAGTCAGTGCATCCACCATATCCAGCACCGTAGATGAATCTGTCTCGACCTGTACTCCCACACTTTTCCCTACTGTCCAAGGCCATGGATCACTAATGGGTCTATCTTTCGAAAGGAGGATGACAACGGGGGATGTGGGTTTTGACAAGTTTTTTGGTAGTTGGAAGGGGTCGTGTGAGGCTGGACCCATGGGAAACCTTATGGGGGTGGACCAATGTAAATGTAACTATTCAGATTCAAACTCAGAAATTTCAGCATCTGAGTCAGTTGCCACCAACAGGAACAGCCTCGCAATTTCTGGGAAAATTGAAAACATGGACGACAAGGTTAACATGCCGTTCATCGATTTTCTTGGAGTAGGAGCTGCATAA 1062 0.436 MFKPKKRKEIDQKFLKHVLCFNEKTEFEFHRVKASAGICIRNFVLLLHYGIGNSILGTKSTNDEGDGYFGVENKSLAFNLGEEVEVKSSAADRNGRTRLTRGHWRPAEDNKLKELVTQYGPQNWNLIASHLEGRSGKSCRLRWFNQLDPKINRRAFSEEEEERLLFAHKEYGNKWSMIATLFPGRTDNAVKNHYHVIMARKQRDLSNAFRRRRPTSETFAKGLNLTLSNNAVSASTISSTVDESVSTCTPTLFPTVQGHGSLMGLSFERRMTTGDVGFDKFFGSWKGSCEAGPMGNLMGVDQCKCNYSDSNSEISASESVATNRNSLAISGKIENMDDKVNMPFIDFLGVGAA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1536 353 SUPERFAMILY Homeodomain-like 98 194 IPR009057 -
Glsi11g1536 353 PANTHER MYB PROTEIN-RELATED 101 261 - -
Glsi11g1536 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 202 IPR017930 -
Glsi11g1536 353 Gene3D - 101 152 - -
Glsi11g1536 353 CDD SANT 104 145 IPR001005 -
Glsi11g1536 353 SMART sant 100 149 IPR001005 -
Glsi11g1536 353 SMART sant 152 200 IPR001005 -
Glsi11g1536 353 ProSiteProfiles Myb-like domain profile. 148 198 IPR001005 -
Glsi11g1536 353 ProSiteProfiles Myb-like domain profile. 96 147 IPR001005 -
Glsi11g1536 353 CDD SANT 155 195 IPR001005 -
Glsi11g1536 353 Gene3D - 154 221 - -
Glsi11g1536 353 Pfam Myb-like DNA-binding domain 104 164 - -
Glsi11g1536 353 FunFam MYB transcription factor 101 152 - -
Glsi11g1536 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 151 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1536 Glsi-ChrGlsi11 9618357 9620836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1536 94 353 MYB Transcription Factor Family AT1G69560 43.657 3.36e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g1536 Myb_DNA-bind_6 9.3e-16 CL0123