Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1528 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACGCCTGAGGAGGATATCATCCTTGTTTCTTACATCCAAGAACATGGCCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACTAACTACCTCAGGCCTGGAATCAAGAGAGGGAATTTCACTTCTCATGAGGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAACGATATAAAGAATTATTGGAACACCCATCTAAAGAAGAAGCTGAAGAAATTTCAAGCAGCCATGGACCCCCACCTGGTATCAGACTCAACAACCACCGGCCAGTTTGTGTCTAAGAGCTTTAATGACAGAATAAGTTTAGATATGAGCAGCAACGACAACAACCATGCTTCATCTCTTAGGCTGAGTCATTCTCAGTCCTCCACCTATGCCTCAAGCACTGAGAACATCTCACGGCTGTTAGAAGGTTGGATGAGATCGTCCCCAAAGCCAGAGCCAGAGTCAAACACTCTTCTCAAAGGGACCCAAGACCATGAGCTTCAAAATAACAACTTCGAAAGCAATAAGCTAGTGAAGTCTACATCAGTGCCTGCTTTAAATTTTGGGTGCTACCGAACCAAAGATGAGCAAGAGGGTGGAGATATAGTGTCCCATGAAGAGTTTGATTCTATTTTGTCGTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACTTGTGATTCTACACCTGAGAAGAGTTGTGAAGCTTCTGCTGAGGCTGCTGATAAGAAGGTTCATGATACAGCCGAGAGGAATAAGCAAAGATCTGATAACAGTACTACTCCTCCATTGTCATTTCTTGAGAAGTGGCTGTTTGATGAAAATGTTGGTCATGAGGAGATGATGGAGCTATCCCCTATGTTTTAA 993 0.4421 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTSHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAAMDPHLVSDSTTTGQFVSKSFNDRISLDMSSNDNNHASSLRLSHSQSSTYASSTENISRLLEGWMRSSPKPEPESNTLLKGTQDHELQNNNFESNKLVKSTSVPALNFGCYRTKDEQEGGDIVSHEEFDSILSFENLNNAAWDKSTCDSTPEKSCEASAEAADKKVHDTAERNKQRSDNSTTPPLSFLEKWLFDENVGHEEMMELSPMF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1528 330 CDD SANT 69 112 IPR001005 -
Glsi11g1528 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi11g1528 330 SMART sant 13 63 IPR001005 -
Glsi11g1528 330 SMART sant 66 114 IPR001005 -
Glsi11g1528 330 FunFam MYB-related transcription factor 13 66 - -
Glsi11g1528 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi11g1528 330 CDD SANT 16 61 IPR001005 -
Glsi11g1528 330 Gene3D - 68 134 - -
Glsi11g1528 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi11g1528 330 FunFam Transcription factor MYB60 68 137 - -
Glsi11g1528 330 Gene3D - 13 66 - -
Glsi11g1528 330 MobiDBLite consensus disorder prediction 266 305 - -
Glsi11g1528 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Glsi11g1528 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi11g1528 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi11g1528 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi11g1528 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi11g1528 330 MobiDBLite consensus disorder prediction 278 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1528 Glsi-ChrGlsi11 9583196 9584579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1528 1 136 MYB Transcription Factor Family AT5G62470 81.884 2.07e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g1528 Myb_DNA-binding 1.7e-15 CL0123