Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1525 ATGGGAAGCCGAAAGGAAGACGAGAGAAACGAGAAGATTATTAGAGGTCTTATTAAACTTCCGCCAAATCGAAGATGTATCAACTGCAATAGTCTGGGTCCGCAATATGTTTGCACGAATTTTTGGACCTTCGTTTGCACAACATGCAGTGGGATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTATCTATGGCGAAGTTCTCTTCGCAAGAAGTTGAAGCTCTTCAAAATGGTGGCAACCAGCGGGCAAGGGAAATATATTTGAAAGATTGGGATTTCCAAAGGCAGCGTTTGCCAGATAGCAGCAATGTTAATAAAATAAGGGAGTTTATAAAGAATGTATATGTGGATAGAAGATACGTTGGAGCAAACATCCATGGAGATGAGACAAGGCGTGCCAGTTCTTATCATTCTTATTCTCAGAGTCCTCCATATGATTACCAATATGAAGATCGAAGGTATGGAAAACAGGCAGCCGCACTGACCAGGAAGCCTGGCTCTGATAAAGGCCGCTATGAAGGGAAGATGTCTAGTATTATCTATAGTCCTGGTCGGTTCAGTGATCATGCATCTGAGGACAGGTTTGCAAACGAGGGATCTGGTCCAAGAATTTCAGACTATTCTGTATGTAGTGGAGGTGAACAATCCAAATTTGGTGTGCAGTCTCCTAAGTTTAATAAGGACATTGGACTTAGCAGTCCATCCTATCAGCATTCTAGTGCTAGTTCAAGTGAAGATGTGTGGTCTCTACCAAGGAATACATCTCTGGAAACAATTGCCAAGAGAGATGTAGATGGATGTCATCCACAGAGAACTACATCAGTCGGATCAACAGACAGCAATCCAATGTCCTTCAGATCTTGCAGTTCTGGTGGTATAGTTGATTTTTTCTCAGAACCTGTCCAAACTTCCGGATCCCTTCAGGACAAAGCGTCTGCTCTTCCACGACCATCTGTTCCGGCAAGATCTGTTAGCATGGATCCTTTAAAGGAACCAGTGGCGTCTGAGTCATTTTCTTCCTCAACACCATCTGTTGATCTTTTTCAGTTGCCAGCATCCTCTCAGGCTCCATCAGTGGATTTTTTTCAACCATCTATTTTGTCTTCAGCTTCATCTTTGAATGAAAATCAACCTTCACAAATTTCCCAGCCCTCGTCTATTGACTTCTTTGCGGATGTTTCTCAGACTGCTGCTACCTCAGATGAGAAGTCGCCAGAGTTAATTGTCCCTAAAAATGAAGGGTGGGCAACATTTGATATGCCTCAGCACACAGCATCTACTGCACAAGTAGAAATTCCAGCAGGAGTACCTTCAACTGATAGATCTTTGCTGGAATTATTTGATCCATTTTCAACTGTAAATGCAGGCATGCAATGGCCATCTTTTGAAACTTCTAGTGTTCATGAACCTTCAATTACAGCTAATTCATGGCATGGTGGTGTGCAAAATGGAGAACAAGTTCCTGTTACAGCAGCAAATACTCAACCATGGAATGCATTTGAAGATTCTGGTACCCACCTCCCAGTAGATCCCCAACTGCACAATCTTCCAACAAGTGATGAACAATTTTTGAGTTTAAGAGGTTCTGAGGGCTCCAATCAAGGTGTTTCCCCCGTTGGTGGACTTGATGATCATAACATTCCATCAAATGTTGTTAGTGATGCACCATATCCTCCTTCTGTGCTTCCTCTGATGGGAGAGACTCAACATAATGCAATCAAGCATAAATCAACTAATCCATTTGATCTTCCCTATGAATCTGATGCAGAGCACAACAATATGTTCCTTAATATGAGCTCTTTGCAAGCTGCTCTGCCAGATGCCCAGTTGCCGCCTCCCTTCCATGGTGGTATAACTGAACCATGGCTCCCTCAAAATATGATTCCTTATATTTCGTCTGCAGGACAAGGTGGTTTAACATTCATGGCTGCGCAACCACCAAGTTCTCAAATACCGAACGTTCAGACGCAGGGACCTGTTGCTTCTTTTGGGGGAAATCCTTTCGCATAG 2013 0.4312 MGSRKEDERNEKIIRGLIKLPPNRRCINCNSLGPQYVCTNFWTFVCTTCSGIHREFTHRVKSVSMAKFSSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDSSNVNKIREFIKNVYVDRRYVGANIHGDETRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKGRYEGKMSSIIYSPGRFSDHASEDRFANEGSGPRISDYSVCSGGEQSKFGVQSPKFNKDIGLSSPSYQHSSASSSEDVWSLPRNTSLETIAKRDVDGCHPQRTTSVGSTDSNPMSFRSCSSGGIVDFFSEPVQTSGSLQDKASALPRPSVPARSVSMDPLKEPVASESFSSSTPSVDLFQLPASSQAPSVDFFQPSILSSASSLNENQPSQISQPSSIDFFADVSQTAATSDEKSPELIVPKNEGWATFDMPQHTASTAQVEIPAGVPSTDRSLLELFDPFSTVNAGMQWPSFETSSVHEPSITANSWHGGVQNGEQVPVTAANTQPWNAFEDSGTHLPVDPQLHNLPTSDEQFLSLRGSEGSNQGVSPVGGLDDHNIPSNVVSDAPYPPSVLPLMGETQHNAIKHKSTNPFDLPYESDAEHNNMFLNMSSLQAALPDAQLPPPFHGGITEPWLPQNMIPYISSAGQGGLTFMAAQPPSSQIPNVQTQGPVASFGGNPFA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1525 670 CDD ArfGap_AGFG 11 121 - -
Glsi11g1525 670 PANTHER ARFGAP/RECO-RELATED 1 670 IPR044820 GO:0005096
Glsi11g1525 670 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Glsi11g1525 670 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Glsi11g1525 670 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Glsi11g1525 670 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Glsi11g1525 670 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Glsi11g1525 670 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 131 IPR001164 GO:0005096
Glsi11g1525 670 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Glsi11g1525 670 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Glsi11g1525 670 MobiDBLite consensus disorder prediction 306 342 - -
Glsi11g1525 670 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1525 Glsi-ChrGlsi11 9568334 9576650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1525 14 88 C2H2 Transcription Factor Family AT4G05330 37.975 4.48e-11 63.2