Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1518 ATGGATCATTATAAGGTTTTAGGTCTGCAAAGAAACGCTACCAAAGAAGATATCAAGGCGGCGTTCAAAAAATTGGCCTTTCAGTGCCACCCAGACAAGCATTCGCAATCGCCCAAGGCCACCAGGGACAATGCTACTCTTAGATTCAAACAGGTCTCTGAGGCTTATGAGGTGCTCATGGATGATCGGAAGCGTGCTGACTACAATATACGGTCGCGGGCTGGCAGTGGCAGAAGTGGGTTCTCTGCTGGCGGAAGTAGCGCTCACAGCTATTATTATTATTATAGTTATAATTATGGTGGGAATGGGAGCACTTATAATTCCAAACCTAGATATAAATCTGGGTCTGGCTTTGGTGTTGACGGCATCGCGTCCAAGTTTGAGCTTGCTCTTCGGTTTCTGACAACACGAGCTTTTCTTCTCAATCTTGGCTTCGCAGGAGTTTTATTAGGCGGGATAGTTATTTTTGATACAAGCAGAGATGCAATATGGAAGATGCAAAATTCTGGGAAATCATTTGAAGAAGCCATAGAGTCCATTGAGAAAGCCAAAGCTAAGAGACGATGA 567 0.4444 MDHYKVLGLQRNATKEDIKAAFKKLAFQCHPDKHSQSPKATRDNATLRFKQVSEAYEVLMDDRKRADYNIRSRAGSGRSGFSAGGSSAHSYYYYYSYNYGGNGSTYNSKPRYKSGSGFGVDGIASKFELALRFLTTRAFLLNLGFAGVLLGGIVIFDTSRDAIWKMQNSGKSFEEAIESIEKAKAKRR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1518 188 CDD DnaJ 2 61 IPR001623 -
Glsi11g1518 188 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Glsi11g1518 188 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Glsi11g1518 188 FunFam DnaJ domain protein 1 89 - -
Glsi11g1518 188 Gene3D DnaJ domain 1 84 IPR036869 -
Glsi11g1518 188 SUPERFAMILY Chaperone J-domain 1 92 IPR036869 -
Glsi11g1518 188 SMART dnaj_3 1 64 IPR001623 -
Glsi11g1518 188 PRINTS DnaJ domain signature 4 22 IPR001623 -
Glsi11g1518 188 PRINTS DnaJ domain signature 44 64 IPR001623 -
Glsi11g1518 188 PRINTS DnaJ domain signature 22 37 IPR001623 -
Glsi11g1518 188 PRINTS DnaJ domain signature 64 83 IPR001623 -
Glsi11g1518 188 PANTHER CO-CHAPERONE PROTEIN DJLA 4 127 - -
Glsi11g1518 188 Pfam DnaJ domain 2 69 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1518 Glsi-ChrGlsi11 9520968 9523455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1518 3 69 C2H2 Transcription Factor Family AT1G74250 37.313 1.35e-10 57.8