Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1510 ATGGGGAGGAAGCGAAAGTTGACGCCAAAAGCTGCTGAATCCGTCGAACCCCCGCTGAAGCAACAACATCAACAACCGGAAATTTTTGAAGACCAAGGAAATGGAGCTGAGTATGAGGATGTTGAAGAAGAGGTGGAAGAAGAAGAGGAGGTAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGACGAGGAGGAGGAGGAGGAGGAACAAGATTCAGAAGAAGAAGGAGCTGAAGATGGTAGCGTTAATCCCAATCACGACCAAAATGCAAATGATCAGACAGCCAAGGTCTCGTCAATATCAGAGACAGTTCAATACGGAAAGGATGATGACGACGACGAGCCGATGCTGAAGCTTCTGGAACCGTTCAGCAAGGAACAAGTTGTAAATCTGCTATGCGAAGCGGCAAATAAACATCGCGATGTAGCGGATCGGATCCGAAAGGTAGCTGATGAGGACCCCGTTCATCGGAAAATATTCGTACATGGCCTCGGATGGGACACAAACGCGGAGACCCTCATCAGCGTTTTCAAGCAATACGGTGAAATTGAAGATTGCAAAGCTGTATGTGATAAGGTATCGGGGAAATCCAAAGGTTATGGTTTTATCCTCTTCAGGACGCGTCGTGGGGCACGCAATGCTCTGAAGCAACCACAGAAAAAGATTGGGAACCGGATGACGGCCTGCCAACTAGCTTCGATTGGCCCGGTTCAACAGCCAGCCGCCCCACAACCAACTCTAGCAGCACCACCGGTATCAGAGTATACCCAAAGGAAGATTTACGTTAGCAACGTTGGAGCCGATTTGGATCCTCGGAAGTTGCAGATATTTTTTTCTAAGTTTGGGGAGATCGAGGAAGGACCATTGGGACTTGATAAGCTGACTGGGAAACCAAAAGGGTTCTGCTTGTTCGTGTACAAGAGCGTTGAAGGTGCTAGAAGGGCGTTGGAAGAGCCACACAAGGAATTTGAGGGTCATATTTTGCATTGTCAGAAGGCAATAGATGGTCCGAAGCCAGGAAAGTCTCAACATCAGCCACACCAGAGAACCCAATTCCAGAGAAATGAGAACCCTACATTTGTTGCTGGGTCTGCCACTGGGCCAGGCCACCTTATGGCGCCGTCGGGACCAGGAATCGGATTTAACCAGGGGGCAGGGGCTGCACAGACACTGAACCCCGCTCTTGGGCAGGCATTGACAGCACTGCTTGCAACTCAAGGGTGGATACAGTAA 1236 0.496 MGRKRKLTPKAAESVEPPLKQQHQQPEIFEDQGNGAEYEDVEEEVEEEEEVEEEEEEEEEEEDEEEEEEEQDSEEEGAEDGSVNPNHDQNANDQTAKVSSISETVQYGKDDDDDEPMLKLLEPFSKEQVVNLLCEAANKHRDVADRIRKVADEDPVHRKIFVHGLGWDTNAETLISVFKQYGEIEDCKAVCDKVSGKSKGYGFILFRTRRGARNALKQPQKKIGNRMTACQLASIGPVQQPAAPQPTLAAPPVSEYTQRKIYVSNVGADLDPRKLQIFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVEGARRALEEPHKEFEGHILHCQKAIDGPKPGKSQHQPHQRTQFQRNENPTFVAGSATGPGHLMAPSGPGIGFNQGAGAAQTLNPALGQALTALLATQGWIQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1510 411 MobiDBLite consensus disorder prediction 1 101 - -
Glsi11g1510 411 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 336 - -
Glsi11g1510 411 MobiDBLite consensus disorder prediction 33 79 - -
Glsi11g1510 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
Glsi11g1510 411 SUPERFAMILY RNA-binding domain, RBD 239 353 IPR035979 GO:0003676
Glsi11g1510 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 335 IPR000504 GO:0003723
Glsi11g1510 411 Gene3D - 239 365 IPR012677 -
Glsi11g1510 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 226 IPR000504 GO:0003723
Glsi11g1510 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 329 IPR000504 GO:0003723
Glsi11g1510 411 SUPERFAMILY RNA-binding domain, RBD 157 240 IPR035979 GO:0003676
Glsi11g1510 411 Gene3D - 149 236 IPR012677 -
Glsi11g1510 411 Coils Coil 38 77 - -
Glsi11g1510 411 SMART rrm1_1 159 231 IPR000504 GO:0003723
Glsi11g1510 411 SMART rrm1_1 260 332 IPR000504 GO:0003723
Glsi11g1510 411 MobiDBLite consensus disorder prediction 335 357 - -
Glsi11g1510 411 FunFam UBP1-associated protein 2A 151 235 - -
Glsi11g1510 411 MobiDBLite consensus disorder prediction 83 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1510 Glsi-ChrGlsi11 9482550 9483877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1510 258 344 C2H2 Transcription Factor Family AT2G19380 39.773 8.04e-12 65.1