Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1481 ATGTCAAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCGACTGCGGGGGCGAGATGCAGTTTGCCCTAGCTGTAGTGAGGGATTTGTTCAAGAACTCAATGATATGGTGCATGTCAACCCACTAGACTTCTTTGGACTGGACAACAATGAAGAACGTGACAGAAGGCTTGGACTTATGGAAGCTTTCTCAGCTTTCATGAGGCATCGACTGGCTGATAGAAGCCATAGCCAAGATATCAGGGCAAGATCAAATTCTGTTTCTGAACACAGTCCAGGGTTTGCTCCTTTGTTGATCTTTGGTGGTCAGATTCCGTTCAGATTGTCTGGACATGGTGGCATTGAAGCTCTTTTTAATGGAACTCCTGGAATTGGTCTGACGCAAGGTAATACAGGTGATTATTTTATTGGTCCTGGACTGGAGGAACTGTTTGAACAGCTTTCAGCTAATGACAGGCGAGGCCCTCCACCAGCATCCAGGTCCTCCATAGATGCTATGCCAACTATTAAGATCACACAGAGACATCTTCGTTCAGATTCTCATTGTCCAGTATGCAAAGATAGATTTGTGCTTGGATCTGAAGCAAGGCAAATGCCATGTAACCATGTATATCACTCAGATTGTATTGTTCCATGGTTAGTGCAGCATAACTCCTGCCCTGTTTGCCGCCAGGAGTTACCCCTGCAAGGATTGAGTAATCATGGTGGCTCCAACAGTCAAAGTAGAGGCAATAATAGTAGTAATGCCAATGGAAGGGTAAATGGTAGGGAGAACCAGGGAAGGCGGAATCCGTTTTCCTATTTCTGGCCTTTCCGCTCATCTAATTCTAGTGCTAATGGAGCATCTGGAAGCAGCTCACCAACACCAACTATCCCTGAGAATACTCATCACACGGGCTATTCTGGGTGGCCATTTGATTGA 930 0.4581 MSSRNTHWCYSCRRPVRLRGRDAVCPSCSEGFVQELNDMVHVNPLDFFGLDNNEERDRRLGLMEAFSAFMRHRLADRSHSQDIRARSNSVSEHSPGFAPLLIFGGQIPFRLSGHGGIEALFNGTPGIGLTQGNTGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPTIKITQRHLRSDSHCPVCKDRFVLGSEARQMPCNHVYHSDCIVPWLVQHNSCPVCRQELPLQGLSNHGGSNSQSRGNNSSNANGRVNGRENQGRRNPFSYFWPFRSSNSSANGASGSSSPTPTIPENTHHTGYSGWPFD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1481 309 SUPERFAMILY RING/U-box 165 232 - -
Glsi11g1481 309 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Glsi11g1481 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 231 IPR013083 -
Glsi11g1481 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 230 - -
Glsi11g1481 309 MobiDBLite consensus disorder prediction 279 309 - -
Glsi11g1481 309 MobiDBLite consensus disorder prediction 236 264 - -
Glsi11g1481 309 MobiDBLite consensus disorder prediction 236 267 - -
Glsi11g1481 309 SMART ring_2 185 225 IPR001841 -
Glsi11g1481 309 CDD RING-H2_RNF126-like 185 226 - -
Glsi11g1481 309 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Glsi11g1481 309 MobiDBLite consensus disorder prediction 279 300 - -
Glsi11g1481 309 Pfam Ring finger domain 184 226 IPR001841 -
Glsi11g1481 309 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1481 Glsi-ChrGlsi11 9347279 9348208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1481 120 230 C3H Transcription Factor Family AT5G01980 44.348 1.05e-27 110